BAC Information

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BAC

Clone NameMSMg01-095H16
Chromosome2 (Build37)
Map Location 15,447,468 - 15,447,830
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
Downstream geneLOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095H16.T7 (MSMg01no095_h16.b1)MSMg01-095H16.TJ (MSMg01no095_h16.g1)
ACCAG312382AG312383
length711875
length of high quality
(start - end)
369 (33 - 401)186 (135 - 320)
definitionCHROMAT_FILE: MSMg01no095_h16.b1 PHD_FILE: MSMg01no095_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:30 2005CHROMAT_FILE: MSMg01no095_h16.g1 PHD_FILE: MSMg01no095_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGACTCCTATATCGAGAGATCCGCGGAATTCAAATTC
CTGACCACAAACTTATCTATATCTTCTACTATACTCTTAGAGTTTGGGAG
GGTGAAGCAGATGCATTAGGAATGCAAGCCTAGTCTAGGCTATGTAGGGA
GAATATCTTTTGAAAAAAAGCAAAATAAAATGAAATACACATATTAATGG
TAGAAATGTGTTTAGTATGTCCAAGGTCCTGAGTTGATTGCAACCTGGGA
GGAACATAATTTTATTCAGTGATTCTAAAAATCTGGTCTGATAGTAATGC
CCTAAATATACATGTGAGGGGTTACATAGGAATAAAGATAGAAAGTCCAT
ATATTGCCCCAGTACAGGGGAATGCCAGGGCCAAAATATGGGAATGGGTG
GGCAGGCCAGTGGGGGGAGAGTTTCTTTTTTTTGTCTCTCTCCTCTTTTT
CTTCACTCCTCCCTTTTCTTCATTTCTCCTTTTTTTATTCTTTTCATATA
TATCCATCTACTATTCTATTTTTTCCCTTTTCTCCCTCCTCTCTTTCCCC
ACTTACTTTTCTTTTTCTTTTCCATTCTTATCCCAGCTTCAATTTTTTTC
TAATTCTCCTTCTCCTCTTTTCTTTCCTTCCCTTTTTCCCCCCTTTCTTC
TATTTTTACCCTCCTTTTTTTTTTTCCCCTCCAGTTTCTTCCATTTTGTC
TTCCCCCCCTG
NTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNCCNCCNTNNNNTAAGAAA
AAANTAAAACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAACCTCCACTTG
GTAACAAATACTCGAAGAAAGAAAGAAAGAAACCCCGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG
AAGGAAGGAAGGAAGGAAGTAACCGTGCTTTTGCCTAGATCCTTTTTGTG
TGTTTCCCTATTTCTGCAGTAATTTGTTATGTCACTTTTTTTTTTGTTGA
GTGGTGTTCTCGCAACGACTCGAATTTTTTTTTTTTTCCCCCCCCCCCCC
CCCTCTGTTTGGAGTTTTTTTTTTCGTTGTTCTTGCTTTTCCTCCCAATA
TAAAAAAAAAAAAAAAAGTAGGGGGGGGGGGGGTGTTCCCTTGTCCGTTT
TGGCTCCCCCGTTTCTGCTCTATCTATGCTATTCTCATTTGTTTTGTTCT
ACCAATTCACGAATATATAATAGCTTACTCATATTTAAATTGCTTTCGTT
TACTTAACTTCCTCAGTATGCTTCGTGCTACACTCCTTTATTTACTCCCT
TATCTGTTCCCTCCTTTTTCTTTTTTCAACGGCCAATCCAACTTTTCTAT
AATTGACTGCTCTGGTTCAGTTCGCAGTACCGTTTGGCGGTGTTTGACTC
ATGTAGTAGAACTTTTATCGCTATTGTCTTTACCGTTCTTCGATGGTTCG
TCTTCGACTCCTCTGCTACTTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_h16.b1 MSMg01no095_h16.b1 CHROMAT_FILE:
MSMg01no095_h16.b1 PHD_FILE: MSMg01no095_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:30 2005
         (369 letters)



>mm_chr2_15447262_15448030
          Length = 769

 Score =  671 bits (347), Expect = 0.0
 Identities = 359/363 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaaattcctgaccacaaacttatctatatcttctactatactcttagagtttggg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaaattcctgaccacaaacttatctatatcttctactatactcttagagtttggg 266

                                                                       
Query: 67  agggtgaagcagatgcattaggaatgcaagcctagtctaggctatgtagggagaatatct 126
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agggtgaagcagatggattaggaatgcaagcctagtctaggctatgtagggagaatatct 326

                                                                       
Query: 127 tttgaaaaaaagcaaaataaaatgaaatacacatattaatggtagaaatgtgtttagtat 186
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 327 tttgaaaaaaagcaaaataaaatgaaatacacatattcatggtagaaatgtgtttagtat 386

                                                                       
Query: 187 gtccaaggtcctgagttgattgcaacctgggaggaacataattttattcagtgattctaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 387 gtccaaggtcctgagttgattgcaacctgggaggaacataattttattcagtggttctaa 446

                                                                       
Query: 247 aaatctggtctgatagtaatgccctaaatatacatgtgaggggttacataggaataaaga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaatctggtctgatagtaatgccctaaatatacatgtgaggggttacataggaataaaga 506

                                                                       
Query: 307 tagaaagtccatatattgccccagtacaggggaatgccagggccaaaatatgggaatggg 366
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 507 tagaaagtccatatattgccccagtacaggggaatgacagggccaaaatatgggaatggg 566

              
Query: 367 tgg 369
           |||
Sbjct: 567 tgg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)