Query= MSMg01no095_i07.b1 MSMg01no095_i07.b1 CHROMAT_FILE:
MSMg01no095_i07.b1 PHD_FILE: MSMg01no095_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:34 2005
(582 letters)
>mm_chr2_74909931_74910913
Length = 983
Score = 1025 bits (530), Expect = 0.0
Identities = 560/572 (97%), Gaps = 5/572 (0%)
Strand = Plus / Minus
Query: 14 gaattcattgccccaccggtggtggctttgagagttctctggctaccttgtcatcatctg 73
|||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gaattcgttgccccagtggcggtggctttgagagttctctggctaccttgtcatcatctg 636
Query: 74 agagatttgtttacaatgaattttt---aaaaaaagttgtctctacagcaagcatctttt 130
||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 635 agagatttgtttaaaatgaa--tttaaaaaaaaaagttgtctctacagcaagcatctttt 578
Query: 131 cgtctatttacatttaaatgaccttggtgaagcctgtctgcaagcatcttgagaattgat 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cgtctatttacatttaaatgaccttggtgaagcctgtctgcaagcatcttgagaattgat 518
Query: 191 ggctgccaaagtgagccttcctgacacgatgcctggcacagcaccagctcaggtctgcac 250
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 517 ggctgccaaagtgagccttcctgacatgatgcctggcacagcaccagctcaggtctgcac 458
Query: 251 agcatgggagtgtgttggagtttgtccgaacaagcttagccccaaagttttagtgcttaa 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agcatgggagtgtgttggagtttgtccgaacaagcttagccccaaagttttagtgcttaa 398
Query: 311 gcaagcatcaggtctgtcagaagcaagccatgacagaggacttgcatttgtgagcaggtt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcaagcatcaggtctgtcagaagcaagccatgacagaggacttgcatttgtgagcaggtt 338
Query: 371 caaaggctgaacatgggcaaagatcctcaaactagataactgctgaatggaaaatcgatt 430
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caaaggctgaagatgggcaaagatcctcaaactagataactgctgaatggaaaatcgatt 278
Query: 431 tagacagtaccctggagtcacacaaatacacctaggtaattgttaggaattaaaaacaaa 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tagacagtaccctggagtcacacaaatacacctaggtaattgttaggaattaaaaacaaa 218
Query: 491 accaagccagttggttttggtgcacgattttaattccagcaccagggaggcagaagcagg 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 accaagccagttggttttggtgcacgattttaattccagcaccagggaggcagaagcagg 158
Query: 551 cagatctatgtgagttccaggacagcccggtc 582
||||||||||||||||||||||||||||||||
Sbjct: 157 cagatctatgtgagttccaggacagcccggtc 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space: 556556
Effective search space used: 556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_i07.g1 MSMg01no095_i07.g1 CHROMAT_FILE:
MSMg01no095_i07.g1 PHD_FILE: MSMg01no095_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:34 2005
(604 letters)
>mm_chr2_74802071_74803074
Length = 1004
Score = 1091 bits (564), Expect = 0.0
Identities = 594/604 (98%)
Strand = Plus / Plus
Query: 1 cttgtgccttttcagccggctgcgaaaacaggcaagaccatcctttaacttttgtgggca 60
|||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 201 cttgtgccgtttcagccggctgcgaaagcaggcaagaccatcttttaacttttgtgggca 260
Query: 61 tgtattcaaccttcttcacaaacctacatttaatttcattgacttgtcttttttttcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgtattcaaccttcttcacaaacctacatttaatttcattgacttgtctattttttcttc 320
Query: 121 agattttgcttttaatccttgccacatgagccgcttcccatcaaaatgttcattttcatt 180
|||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct: 321 agattttgcttttaatccttgccacaagagctgcctcccatcaaaatgttcattttcatt 380
Query: 181 agggatgggaggaagatttctccgaggggagtgtctgctttgaaggaagaagcagagggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggatgggaggaagatttctccgaggggagtgtctgctttgaaggaagaagcagagggt 440
Query: 241 tagagaattcaaaatgccaattatgtgtaaggtcggctggtgaggagcaacgctataaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagagaattcaaaatgccaattatgtgtaaggtcggctggtgaggagcaacgctataaag 500
Query: 301 gccacggagtttactgcaaaagggtgccccctgctggaggctccttcaattgcgtcagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccacggagtttactgcaaaagggtgccccctgctggaggctccttcaattgcgtcagct 560
Query: 361 cagctcagttcataacctaaagcagctgcctttcccagtgccaactcagattctctgcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagctcagttcataacctaaagcagctgcctttcccagtgccaactcagattctctgcag 620
Query: 421 atgtttccttatgacccatccacatgcttgctaaatatcatctgttaattccccccaaac 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 atgtttccttatgacccatccacatgtttgctaaatatcatctgttaattccccccaaac 680
Query: 481 atcctggatctagttcttttatgtgtaactcgacttaaggtcttaaaatagatgacagca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcctggatctagttcttttatgtgtaactcgacttaaggtcttaaaatagatgacagca 740
Query: 541 aaaacattttaaaaatatacctcacaggtacaattgtcttgaatatcatcagcacactaa 600
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaacatttaaaaaatatatctcacaggtacaattgtcttgaatatcatcagcacactaa 800
Query: 601 ctcc 604
||||
Sbjct: 801 ctcc 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
