BAC Information

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BAC

Clone NameMSMg01-095J08
Chromosome2 (Build37)
Map Location 85,344,459 - 85,344,926
singlet/doubletsinglet
Overlap gene4833423E24Rik
Upstream geneLOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995
Downstream geneOlfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095J08.T7 (MSMg01no095_j08.b1)MSMg01-095J08.TJ (MSMg01no095_j08.g1)
ACCAG312462AG312463
length650670
length of high quality
(start - end)
468 (28 - 495)495 (56 - 550)
definitionCHROMAT_FILE: MSMg01no095_j08.b1 PHD_FILE: MSMg01no095_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:39 2005CHROMAT_FILE: MSMg01no095_j08.g1 PHD_FILE: MSMg01no095_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCTGAGAGCTGCAATTATCATTATCTAAACTATTGT
TTTTCTATGAGAGTTAAAGTTGACTGTGAGTTGATATCTGTATAACTATT
GGGGCTACTACTATAAAAGGCTGGTAAAACTGGGTGACAGGAGGTGTGGA
GTTAAGTCCAGCATATGTCGCTGGCTTGCTAATTATTTTGAGGTAGTTGC
TCTTCTGAATTTCAGTGATCTTCTACTCTAATTGTAGTAAAAAATGAAAA
GGCTGGGAGAAATCCTAGAGACAAATTGATATCATAGGCTAATCAAAATT
GTCGATAGCCACCAGAATTCAAAGTTTGATGGGAGTTGGATATGGGCTTG
TGAGCATTTTGGGGCTGATAGTGGGTCCTTTAAAAGTTCCATCAATCACA
GGTACACCCACACACATAAAATAATGTGATAGCCATTAGCAATTAGGAAA
TATATTTAAACAAAGATGCTACTTCTGTAATTTCACAGCTTGGCGATTGT
GTAACCCAGAACCTATGTCCTGTGATACTTCTTATGCATCTACCCAACTC
CCCCAAGAAGAGGCTTTTCATACCTAGATGAAAAACACTCACTAGTGAAA
TGGATACATACTGTGTGTTGCTGAATACAGTACACGATAGCTTCCTTTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTTGTTGATGCTTGCATCTATGGTTCCTGATTTCTTTCCTAGGG
TTTCTATCTCCAGAGTTGTCTCCATTTGGATTTTCTTTATTGTTTCTACT
TCCATTTTTAGATGTTGGATGGTTTTGTTCAATTCCATCACCTCTTTGGT
TGTGTTTTCCTATAATTCTTTAAGGGATTTTTGTGTTTCCTCTTTACGGA
CTTCTAGCTGTTTAGCAGTGTTTCCTGTAATTCTTTAAGGCCTTCTACCT
GTTTAGCAGTGTTCTCATATATTTCTTTAGGTGAGTTTTTAATGCCCTTC
TTAAAAATCCCCTACCAGCATCAAAAAATATGATTTTAAATCTGAATCTT
GCTTTTCGGGTGTGTTGGGGTATCTAGGACTCTCTGTGGTGGGCATACTG
GGTTCTGATGATGCCAAATGGTCTTGGTTTCTGTTAGTAAGATTCTTACG
TTTGCTGTTCGCCATCTGGTAATCTCTGATGTTAGATGTTCTAGGTGTCT
CTGGCTAGAGCTTGTTCCTCCTGTGATTCTTTAGCCTCTGTCAGCACTCC
TGGAAGACCAACTCTCTTCCAGGTCCCACTGGATTCAGAACTCTCTGCAG
GAAATATTCTCCTCTTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_j08.b1 MSMg01no095_j08.b1 CHROMAT_FILE:
MSMg01no095_j08.b1 PHD_FILE: MSMg01no095_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:39 2005
         (468 letters)



>mm_chr2_85344259_85345126
          Length = 868

 Score =  882 bits (456), Expect = 0.0
 Identities = 465/468 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attatcattatctaaactattgtttttctatgagagttaaagttgactgtgagttgatat 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 668 attatcattatctaaactattgttcttctatgagagttaaagttgactgtgagttgatat 609

                                                                       
Query: 61  ctgtataactattggggctactactataaaaggctggtaaaactgggtgacaggaggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 608 ctgtataactattggggctactactataaaaggctggtaaaactgggtgacaggaggtga 549

                                                                       
Query: 121 ggagttaagtccagcatatgtcgctggcttgctaattattttgaggtagttgctcttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggagttaagtccagcatatgtcgctggcttgctaattattttgaggtagttgctcttctg 489

                                                                       
Query: 181 aatttcagtgatcttctactctaattgtagtaaaaaatgaaaaggctgggagaaatccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aatttcagtgatcttctactctaattgtagtaaaaaatgaaaaggctgggagaaatccta 429

                                                                       
Query: 241 gagacaaattgatatcataggctaatcaaaattgtcgatagccaccagaattcaaagttt 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gagacaaattgatatcacaggctaatcaaaattgtcgatagccaccagaattcaaagttt 369

                                                                       
Query: 301 gatgggagttggatatgggcttgtgagcattttggggctgatagtgggtcctttaaaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gatgggagttggatatgggcttgtgagcattttggggctgatagtgggtcctttaaaagt 309

                                                                       
Query: 361 tccatcaatcacaggtacacccacacacataaaataatgtgatagccattagcaattagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tccatcaatcacaggtacacccacacacataaaataatgtgatagccattagcaattagg 249

                                                           
Query: 421 aaatatatttaaacaaagatgctacttctgtaatttcacagcttggcg 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaatatatttaaacaaagatgctacttctgtaatttcacagcttggcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)