Query= MSMg01no096_a21.b1 MSMg01no096_a21.b1 CHROMAT_FILE:
MSMg01no096_a21.b1 PHD_FILE: MSMg01no096_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:16 2005
(288 letters)
>mm_chr2_124168924_124169611
Length = 688
Score = 484 bits (250), Expect = e-141
Identities = 280/290 (96%), Gaps = 3/290 (1%)
Strand = Plus / Minus
Query: 1 ccagcatcaagcctggtgtatatatataagttcccacgaatgctctccgcccagctaatc 60
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 344 ccagcatcaagcctggtgtatatatataagttcccacgaatgctctctgagcagctaatc 285
Query: 61 cagcatactcctttaatccagtcttctgcaactgcatcacacatatgagggcaatagcta 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 284 cagcatactcctttaatccagtcttctgcaactgcatcacacgtatgagggcaatagcta 225
Query: 121 gctctttgttgttgttg-tttttttaaataatttatttctcatactctatatgccattac 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gctctttgttgttgttgttttttttaaataatttatttctcatactctatatgccattac 165
Query: 180 ctgcccccatccaccctccaactactccacatcccacacctcctccccatgccccctgtc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ctgcccccatccaccctccaactactccacatcccacacctcctccccatgccccctgtc 105
Query: 240 tccacatggatgttcccacccccaa-cccgacgtgacctctaaactccct 288
|||||||||||| ||||| ||||| ||| ||||||||||||||||||||
Sbjct: 104 tccacatggatgcccccacgcccaaaccc-acgtgacctctaaactccct 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no096_a21.g1 MSMg01no096_a21.g1 CHROMAT_FILE:
MSMg01no096_a21.g1 PHD_FILE: MSMg01no096_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:16 2005
(422 letters)
>mm_chr2_124026264_124027085
Length = 822
Score = 779 bits (403), Expect = 0.0
Identities = 418/423 (98%), Gaps = 2/423 (0%)
Strand = Plus / Plus
Query: 1 atccaagacctcagtttgtgtttagttttcatgtcccattagtttgttccaatttgagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccaagacctcagtttgtgtttagttttcatgtcccattagtttgttccaatttgagac 260
Query: 61 agtccctga-ttttttccccttatcttttgtgatttgggcaatttttaatgggtcttgta 119
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtccctgatttttttccccttatcttttgtgatttgggcaatttttaatgggtcttgt- 319
Query: 120 acatttgttatacaaaatatcattcagtgaaaaatagcagagaaatccttgtgctgttcc 179
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acatttgttatacaaaatatgattcagtgaaaaatagcagagaaatccttgtgctgttcc 379
Query: 180 ctgggaatcatatgaagggtgcatgagtgtctcactactggggatattagcctccaacac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgggaatcatatgaagggtgcatgagtgtctcactactggggatattagcctccaacac 439
Query: 240 tcctttaagaggatggctaaagggcctactcttctctttcaattgatgtgtctggagaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcctttaagaggatggctaaagggcctactcttctctttcaattgatgtgtctggagaca 499
Query: 300 tctatttggagttaatcttataccacatgcatttcatccctaacatttacacagtgattt 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 tctatttggagttaatcttataccacatgcatttcatccctaacatttgcacagtgattt 559
Query: 360 ttagagcacagtgatagatgtctcctgtattggtggcatttacctaatggcagttttgta 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 ttagagcacagtgatagatgtctcctgtattggtggcatttacctaatggctgttttgta 619
Query: 420 ttg 422
|||
Sbjct: 620 ttg 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
