BAC Information

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BAC

Clone NameMSMg01-096D10
Chromosome2 (Build37)
Map Location 88,559,667 - 88,560,181
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196
Downstream geneOlfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096D10.T7 (MSMg01no096_d10.b1)MSMg01-096D10.TJ (MSMg01no096_d10.g1)
ACCAG312943AG312944
length700703
length of high quality
(start - end)		503 (19 - 521)492 (56 - 547)
definitionCHROMAT_FILE: MSMg01no096_d10.b1 PHD_FILE: MSMg01no096_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:29 2005CHROMAT_FILE: MSMg01no096_d10.g1 PHD_FILE: MSMg01no096_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTACCATATTCCAGAGATCCGCGGAATTCATTTAATATTCGCCAAGTTCA
AACAGATTCAGCAAATTAGGCACATTATAGCCTCTGGATCATTTTTTACT
AGCTGAAAGGAAAATTTTAGGCGGTAATGCTGTCCAAAAGGTCAATGTTT
TGTACCATTATGTGTTAACATATTCCCTATGGAAGGCAGAAATAGATTTT
TTTCTTTCATCATCCTATGGGAAAGCTGGTATCAAAAACTATGTGCAAAT
AAGACTCACTTAGCCAGTCCTCTAACAGGTGAGAAATATTAATTCTAAAT
TTTTTAGTTCAGAGATGCATTACTAGAGATTTGGTGAATATGTATATTTT
CATATGGCCTTATGTACTATGTGAATATATTATTAGAATACTTTACTAAT
ACTTGAAAACTCTATTTTTAAAGGTTTACTGTTATGATAAATATGAAATA
CTATCTTTGAAAAAAAGGAAATTCTCTAAAATCAGTGAATTCCTTATAAT
AAATTATTATGGGAAATGCATTAATTTTGTTTTACAAGAAAATGATGCAT
TCAATATATTACAGTTTATGATTATTTCCAGAGGTATTAAGGTATAATGG
ATAAATTTCCCCAATGTTATCATGTAAAGTTGCTAAATGAGATTAGGCTG
AGCTATCCATGTGCACTCTTAAACTTAAAAGATTTTATGTCGAACTATTA


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTGTTTAGCTCTGTACCCCAATTTTAATAGGGTTATTTTATTTT
CTGGAGTCCAACTTCTTAAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGGTTTAGGATTGGTAAAGATCCTTTCCCAATATGTTGGTGGTCATT
TTGTCTTATTGACAGTATCTTTTGCCTTACAGAAGCTTTGCAATTTTATG
AGGTCCCATTTGTCAATTCTCAATCTTACAGTACAGTACAGCCATTGCTG
TTCTGTTCAGGAATTATCCCCTTGTACCCATATTTTCAAGGCATTTTCCC
ACTTTCTCCTCTGTAACTTTCAGTGTCTCTAGTTTTATGTGGAGTTCCTT
GATCCACTTAGACTGGAGATAAGAATGGATTGATTCACATTCTTCTACAT
GCTAACCGCCAGTTGTGCCAGTACCATTTATTAAAAATGCTGTCTTTTTT
TCCACTGGAGGGTTTTAGCTCCCTTGTCAAAGATCAAGCGACCATAGGCA
TGTGGGTTCATTTCTGGGTCTTCAATTTTATTCTGTTGGCCTACTTGTCT
GTTGCTGTACTAGCATCATCCAGTTTTTTTGTTTCCGTTTGTTTGCTTGC
TCTCCACCTCATATGCTCTGAATCATCGCTTTTCCCCCATCCTTGCTGAC
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_d10.b1 MSMg01no096_d10.b1 CHROMAT_FILE:
MSMg01no096_d10.b1 PHD_FILE: MSMg01no096_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:29 2005
         (503 letters)



>mm_chr2_88559593_88560493
          Length = 901

 Score =  485 bits (251), Expect = e-141
 Identities = 448/527 (85%), Gaps = 41/527 (7%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcatttaatattcgcc-aagttcaaacagattcagcaaattaggcacattatagcc 64
           |||||||||| ||||| ||| || ||||||||||||| | |||||||| ||||| |||||
Sbjct: 589 gaattcattttatatt-gcctaaattcaaacagattctgaaaattaggtacattgtagcc 531

                                                                       
Query: 65  tctggatcat-ttttt--actagctgaaaggaaaattttaggcg-gtaatgctg-tc-ca 118
           ||||||  || |||||  || |||| ||||| |||||||||| | ||||||||| || | 
Sbjct: 530 tctgga--atatttttgaac-agctcaaagggaaattttagg-gagtaatgctgttctc- 476

                                                                       
Query: 119 aaaggtcaatgttttgtaccattatgtgttaacatattccctatggaaggcagaaataga 178
            ||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 475 -aaggtcaatgtcttataccattatgtgttaacatattccctatggagggcagaaataca 417

                                                                       
Query: 179 tttttttctttc-atcatcctatgggaaagctggtatcaaaaactatgtgcaaataagac 237
           |||||||||| | | |||||||||||||||||| ||||||||| ||||||||| | ||||
Sbjct: 416 tttttttctt-ctagcatcctatgggaaagctgctatcaaaaagtatgtgcaattgagac 358

                                                                       
Query: 238 tcacttagccagtcctctaacaggtgagaaa-tattaattctaaattttttagttcagag 296
           ||||||||||||||||| ||||||||| ||| |||   || || |||| | | |||||||
Sbjct: 357 tcacttagccagtcctcaaacaggtga-aaagtatg--tt-tacatttgtgaattcagag 302

                                                                       
Query: 297 atgcattactagagatttggtgaat-atgtatattttcatatggccttatgtactatgtg 355
           |||||||| |||||||||||||||| || |||||||| ||||||||||||||||| ||||
Sbjct: 301 atgcattattagagatttggtgaattatatatattttaatatggccttatgtactgtgtg 242

                                                                       
Query: 356 aatatattattagaatactttactaatacttgaaaac---t--------------ctat- 397
           |||||||| |||||||||||||||||||||||||||    |              |||| 
Sbjct: 241 aatatatttttagaatactttactaatacttgaaaagaagtattaaaattaaaaactata 182

                                                                       
Query: 398 -ttttaaaggtttactgttatgataaatatgaaatactatctttgaaaaaaaggaaattc 456
            |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| 
Sbjct: 181 attttaaaggtttactgttattataaatatgaaatactatcattggaaaaaaggaaattt 122

                                                          
Query: 457 tctaaaatcagtgaattccttataataaattattatgggaaatgcat 503
           |||||||||||||||||||||||||  ||| |||||| |||| ||||
Sbjct: 121 tctaaaatcagtgaattccttataagcaatgattatgagaaaggcat 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 901
Length adjustment: 10
Effective length of query: 493
Effective length of database: 891
Effective search space:   439263
Effective search space used:   439263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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