BAC Information

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BAC

Clone NameMSMg01-096G24
Chromosome2 (Build37)
Map Location 40,711,766 - 40,712,008
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096G24.T7 (MSMg01no096_g24.b1)MSMg01-096G24.TJ (MSMg01no096_g24.g1)
ACCAG313114AG313115
length706714
length of high quality
(start - end)
491 (49 - 539)244 (64 - 307)
definitionCHROMAT_FILE: MSMg01no096_g24.b1 PHD_FILE: MSMg01no096_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:47 2005CHROMAT_FILE: MSMg01no096_g24.g1 PHD_FILE: MSMg01no096_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCATAAGTTCAGAATACGCGGAATTCTCCAAGTGTGTTACCGTCAATA
TGTGATTTATGCTGTAGTACTGTTTGGTATTTTGGGGGCCTAGATGATAC
ACACTGAAACTCTCTCTTGATGAATTTTTCCTTTGACAAGCACACAGTGT
TTTCCCCTATCTATTCTTATTTGGTTGCTGTCTATTTTGCTACACATTAA
AATCACAAAACACGTCACTTGATATGCACTCACTGATAAGTGGATATTAG
CCCAGAAACCTAGAATATCCAAGATACAACTTCCAAAACACAAGAAAATC
AATAAGGAAGACCAACGCCTGTATACTTCATTCCTCCCTAGAATACGGAA
TAAAATATCCATGGAAGGAGTTACAGAGACAAAGTTTCAAGCTAAGACGA
AGGGATGGACCATCCAGAAACTGCCCCACCCAGGGATTCATCCCATAATC
AGCCACCAAACGCAGACGCTATTGCATATGCCAGCAAGATTTTGTTGAAG
GGACCCTGATATAGATGTCTCCTGTGAGGCTTTGCCAGTGCATGGTAAAT
ACAGAAGTGGATGCTCATACTCATCTATAGGATGCAACACAGGGCCCCCA
ATATAGGACCTAGAGAAAGTACCCAAGATCTGAACAGGTCTGTTACCCTA
TAGGTGCAACATCAATTATGAACTAAATAGTACCCCCGGAGCTCTAGCTT
CTAGTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCA
ATACTTTTCTGTTGTTGGTGAGAGATAAGTCAAGAATTATCCATTCGATC
ACTAAGCTGTTTAATGCAATTAAACATCCAAACTTTGAAAAGGCATTTTG
GGGCTGTTTTCTAAATTTCCTTCAGAGAAAATTGTGATTATTTTATGACT
TTTCTTATACTATGTATAAGAATATTCTATCTCAAATTAGTTAAATGACT
TTCTTAGAATCATTTAGTGTGTAAAATATTAAACTGGGGGCTGTAATTCA
ATATTCTGTTTATAGTCCCACATTTTTCAACTACATCATATTTGAGGTTT
TAGTAATAAAATGACCATAGCTTGAGAGTCTGTTTTCCAGTAAACACCCA
AACAAACGGGGGGGGGGAGCTGAAGGCACACAAGTCCTGCATACTCCCAT
CAGAACAGTTAAACTTTCTTTAATAACAGGGGTATTTTAAGCATGAATTT
GTAATATACTACCTGAATCATTGCAAGCATGCCTTGTTGTTTTAAATACA
GGACCTCAAACACCCTTTCCAGAGCTCTTTCAGTGAAGTATAACTTTATC
TCCATACCTTATGTCTAAAAGTACCTTTTTGTCCAGCTATTTTCCACATG
CATTTATTAACTAACCGTCTGAAATACTATCTTGTCCCCCTCTGATGATT
CTGCCGTACCAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_g24.g1 MSMg01no096_g24.g1 CHROMAT_FILE:
MSMg01no096_g24.g1 PHD_FILE: MSMg01no096_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:47 2005
         (244 letters)



>mm_chr2_40711566_40712209
          Length = 644

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggtgagagataagtcaagaattatccattcgatcactaagctgtttaatgcaattaa 60
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 443 gttggtgagagataagtcaagaattgtccatttgatcactaagctgtttaatgcaattaa 384

                                                                       
Query: 61  acatccaaactttgaaaaggcattttggggctgttttctaaatttccttcagagaaaatt 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 383 acatccaaactttgaaaaggcattttggggatgttttctaaatttccttcagataaaatt 324

                                                                       
Query: 121 gtgattattttatgacttttcttatactatgtataagaatattctatctcaaattagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgattattttatgacttttcttatactatgtataagaatattctatctcaaattagtta 264

                                                                       
Query: 181 aatgactttcttagaatcatttagtgtgtaaaatattaaactgggggctgtaattcaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aatgactttcttagaatcatttagtgtgtaaaatattaaactgggggctgtaattcaata 204

              
Query: 241 ttc 243
           |||
Sbjct: 203 ttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)