BAC Information

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BAC

Clone NameMSMg01-096L24
Chromosome2 (Build37)
Map Location 94,797,789 - 94,798,029
singlet/doubletsinglet
Overlap genenone
Upstream geneAlkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096L24.T7 (MSMg01no096_l24.b1)MSMg01-096L24.TJ (MSMg01no096_l24.g1)
ACCAG313354AG313355
length803755
length of high quality
(start - end)
---241 (71 - 311)
definitionCHROMAT_FILE: MSMg01no096_l24.b1 PHD_FILE: MSMg01no096_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:13 2005CHROMAT_FILE: MSMg01no096_l24.g1 PHD_FILE: MSMg01no096_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGC
GGAATTCTGTATTGTTCCGAGGTCCTCTGCATAGTTGCTGTGGTTGTGTA
TCTTGGCGTTCTTGTAGGACCTTACCTGTGGATGTAGGGATGTCATTGCC
TCTTTTGCCTGCTGTTATAGACCTCTTCCTCTTACTGTGATGCCTCATCC
AGCCTTAATATGAGGTTTTGAGCCTAGTCTTTTTGTAATTTGTTATGCTG
CGCCCAATTGGTATCCCTATGATGCCTGCTCTTTTCTGAAGGCAAACTTA
AGACGCCTGGATCTGGTGCACATATGTGGCCATAGGTGGCACAAACTGAC
ATGTGTGTATTATTGTTAAATTTTACCCGCCACGTCATGACCCTTACTTT
TTCCATCCTCTTTCTCCCCCCACCCTTTTTTTCCCATCCCCCCCCCCCGG
TTTTTTATTCCTTCCTCCCTTCCCTCCGCTTATTTCCTTCCCCCATCCTC
CCCTTTTCCTTTACGCCCCCTCCTCCCCTTTTCCTTCCCTTCCCTTCCAT
TTTAACTCCCCGCCCTTTTTTTCTTCTTTTCCCCCTTCCCTCTTTCTTCC
TCCATACTTCCTCCCCCTTTTCTTTACCTCCCCCCCGTCTTCTCGATTTC
CCCCTCCTTCCCTCCTATTTTCCCGCGTCCTGCCCCTAACTCTTTTCCTA
CTATTCCCGGTCTCCTCTCTCGCCTTTCTACTTCCCCGCCCCTTCCTTTA
CGTACTTCTTCCCTTCCGCCCCCTTATCCGCCTCCCCTTCTCTTTCCTTC
CTC
TGAAGCGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCCCGGAATTATACCCTACTGTCCGCAGAGAGACAATTTAC
ATGTTATGTGGCACTAGCTCAGACATGCTTCTCCTGATTCATCTGAAGGG
CATTGAAGGGGAGTCACAGCCTTTAATATTCCTCCACAGTCTCGCTGCTT
GTTCAGGTGGCTTTATGGTCTCATTTTGGTCTGGCTACCTTCCAGAAGGA
TTTACTCCAGTGTTTCTGGAAAGGTCACCGTGAGGCCGAGGTGAAGGCAG
GCTCAAGGTCCACCAAAGGATTTCTACTACTTCCAGAAGGTAGCTGAAGG
AACTGAAAGGGTCAATATCTAGGCTAAGTGCTGCCCCATCTCCCTAGTGG
CTGCTGTAGTAGCCATTGCTAATTGATTTTTTGGTTGTACTTGCATACAG
CCTCAGCAATACTGTCACATCACTCTTGTCACAGTTGAGCTACCATCAAC
TGACCTTAGTCATCCCTCAGCTGAAGATTATTACTTCCCACCCTGGAAAA
TCAACCATGTACAGCATACCGATGTTGTTTAGCTGAACCATGGCCTGCGC
ACAGTCCGTGACACCATGCTATCAAATCCCATCTCAGTTTCTGCCACCCT
CCTCAGGCTGACCATGATTACCGCGACCTTTTTCCCCTGCCTGTGCCCCC
ACTTCTCTCCGTAATCGCCCTTTCCCCTTATTTCCCTCACCTCTCTTGAC
TCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_l24.g1 MSMg01no096_l24.g1 CHROMAT_FILE:
MSMg01no096_l24.g1 PHD_FILE: MSMg01no096_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:13 2005
         (241 letters)



>mm_chr2_94797589_94798229
          Length = 641

 Score =  435 bits (225), Expect = e-126
 Identities = 237/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taccctactgtccgcagagagacaatttacatgttatgtggcactagctcagacatgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taccctactgtccgcagagagacaatttacatgttatgtggcactagctcagacatgctt 260

                                                                       
Query: 61  ctcctgattcatctgaagggcattgaaggggagtcacagcctttaatattcctccacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctgattcatctgaagggcattgaaggggagtcacagcctttaatattcctccacagt 320

                                                                       
Query: 121 ctcgctgcttgttcaggtggctttatggtctcattttggtctggctaccttccagaagga 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ctcgctgcttgttcaggtggctttatggtctcattttggcctggctaccttccagaagga 380

                                                                       
Query: 181 tttactccagtgtttctggaaaggtcaccgtgaggccgaggtgaaggcaggctcaaggtc 240
           |||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct: 381 tttactccagtgtttctggaaaggtcactgtgaggctgaggtgaaggcgggctcaaggtc 440

            
Query: 241 c 241
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)