BAC Information

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BAC

Clone NameMSMg01-096P20
Chromosome2 (Build37)
Map Location 136,206,111 - 136,206,444
singlet/doubletsinglet
Overlap genePak7
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788, Plcb4, 6330527O06Rik
Downstream geneLOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096P20.T7 (MSMg01no096_p20.b1)MSMg01-096P20.TJ (MSMg01no096_p20.g1)
ACCAG313535AG313536
length745737
length of high quality
(start - end)
334 (80 - 413)---
definitionCHROMAT_FILE: MSMg01no096_p20.b1 PHD_FILE: MSMg01no096_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:33 2005CHROMAT_FILE: MSMg01no096_p20.g1 PHD_FILE: MSMg01no096_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTAAATATTCCCCCACTGAAAAGAATCACAAAACAAAA
TATGGATTTAAATATGTATTATGTATTTTTTGTAGATACACACATTTAAA
CTATATGAGCAGTAGTGATGCCAACCATGACAGTTAATAAAACAATACCC
TGAAGTATTATTGCAAAAGTTCTAAATGATCGACATCACCCTTGTTGTCC
AAATAGCTAAACAAATAATTCAAAAGGAAGACATATAAAAGTCAAGTGGA
ATTATCTACTTTGCTTTCCTGCTATTAATAATAGAAATGCAGATAAAAAT
AAAAGTGAGATGTGTATCAAATATTAAAATTGTAAAAAATAACAGCACTA
CTGACAGAGAAGCGTTGACAGACCCACCCTCATTTGTTTGTAGTTGGAAG
ACTACATGAAGCCTTCTGAGAGATGAGCGCGAAAATATTTGACAGGCTGT
TAAAGATTCACCATTACTTGAACGAAACTTCTTGCTTTAATTTGTACCTC
CGTCTTTGAGAAGGACCCAGATGCCTTCAATGCTTTGGCACTACATTATT
CCTTATAGCGTACATCAAACTTAGCCTAAGCATATTTAATTAAATGCCCA
ACCGATGCCCATCCCCCCCTTTAACCTCTTATAGATGCTCGCGCCCATTA
TGTCCACCTTTCAATGCCGCTTATTGCCACCCATCCTGTCTTCGC
TAAACAATGATACTGCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGAGGTTTTAAAAATC
CAGAGCTGAATGAAAAATAAAAATCAGACCCACAAAAATCTAATGAATAA
AGTCTCTGTTGACAGAGGTTTCAGCTATAAGTTCCTACATTAAAAAAATC
AGAGAGATAATAAATACATTATTTAATGAGATTACTCAGAAGAGTGGAAA
ATAAGAACAACCCAACCACCAAACAAGAATAAAAGATGAGGACATAAATT
ATTGAAGTAGAACTGAAAAATTTATAAAGATTCAATGAATCAGAAAGCTC
TTGAAAGTTTTTTGAATAGTGTTTACAAGATTGACAAACCCTTAACCAAA
TTAAGCATATTAGAAAGGAGACCCCCCATAATAATTTTATGAAAAGCCCA
CATTATTACGGATACTAAGGAAGTTCAAAGTCATTATGATTCACCTTTAC
CATTTATTTACCCTTCACTAACTTATATAATCTACCATATTTGAATGAAC
CTCTAGAGACCTGTACCCTATGTATTCGAATCGATAAGGTAAATGATTTA
CATAATTCCGAAATCATGTGAACTGACCGTGATTATAATTTTCCCAACGA
CAAAAAGTTAAGGCCATTTGGCTGACATAATTCCTACGCCGTTACTTCCC
CATCTTGTTCCCGATTTTCCCACACTTCTTGCTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_p20.b1 MSMg01no096_p20.b1 CHROMAT_FILE:
MSMg01no096_p20.b1 PHD_FILE: MSMg01no096_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:33 2005
         (334 letters)



>mm_chr2_136205911_136206644
          Length = 734

 Score =  630 bits (326), Expect = 0.0
 Identities = 332/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaagaatcacaaaacaaaatatggatttaaatatgtattatgtattttttgtagatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaaaagaatcacaaaacaaaatatggatttaaatatgtattatgtattttttgtagatac 475

                                                                       
Query: 61  acacatttaaactatatgagcagtagtgatgccaaccatgacagttaataaaacaatacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 acacatttaaactatatgagcagtagtgatgccaaccatgacagttaataaaacaatacc 415

                                                                       
Query: 121 ctgaagtattattgcaaaagttctaaatgatcgacatcacccttgttgtccaaatagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctgaagtattattgcaaaagttctaaatgatcgacatcacccttgttgtccaaatagcta 355

                                                                       
Query: 181 aacaaataattcaaaaggaagacatataaaagtcaagtggaattatctactttgctttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 354 aacaaataattcaaaaggaagacatataaaagtcaagtggaattatctattttgttttcc 295

                                                                       
Query: 241 tgctattaataatagaaatgcagataaaaataaaagtgagatgtgtatcaaatattaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgctattaataatagaaatgcagataaaaataaaagtgagatgtgtatcaaatattaaaa 235

                                             
Query: 301 ttgtaaaaaataacagcactactgacagagaagc 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ttgtaaaaaataacagcactactgacagagaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)