BAC Information

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BAC

Clone NameMSMg01-097A05
Chromosome2 (Build37)
Map Location 144,491,932 - 144,492,272
singlet/doubletsinglet
Overlap geneDtd1
Upstream genePcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561
Downstream gene1700010M22Rik, Slc24a3, LOC627312, OTTMUSG00000015643
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097A05.T7 (MSMg01no097_a05.b1)MSMg01-097A05.TJ (MSMg01no097_a05.g1)
ACCAG313552AG313553
length764783
length of high quality
(start - end)
341 (173 - 513)217 (130 - 346)
definitionCHROMAT_FILE: MSMg01no097_a05.b1 PHD_FILE: MSMg01no097_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:35 2005CHROMAT_FILE: MSMg01no097_a05.g1 PHD_FILE: MSMg01no097_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGATTAATTTATTTTTACTCTTTCTTTTTTTCCTCCCCCCCTCTTTTTTT
ATTTCTATAATTTGGGCGCTAATAGATACTATTCATGACAAGGGCGGAAT
CTAAGTGTTACGACAACACGCCAAGAAAAGAAGACAAGAGTCTTGTTGCC
TCTGTTTGTTCAAGACACCCGATGTTCTTGGACTATGGTTTCATGCTCCT
CGAAGGTATAAAGGATAGGGGTGAATCTACTTCAGATGACTCCTTACTGC
TTGCTGCTGTTCTTCAATCAAATATTTAAACTATGCTCTCTATGCTTTAT
GAAAAACATGTCTTTGTCGCATGCAGTCTGTCCTTCTAATTGTATACCGC
TTGAACTCATAAGGATTTCATTCATGTGACCCTTTTTAACCCTCAGAGTA
TAAAGTGTTTGCAGCTTTGAATACAGCTATTGAATATTTGAATACGGTTG
GCTATCATATGAGACTTTAGTCCCTCTCATTCACTGGTTCCATTCCCCCA
GGTCCCACCAGCTCTAGAGCAGTGACAACTTATTTTTATTAGTATATTTG
AATTGTATTAGATAACGGGTTTCACCATGACATTTTCATATGTGTATAGA
GCGCGCTTTGATTACCACCCTATCGTCCCTTTCAGTCCCCCATGTTCTCA
TCCACAGGTCCCTTCTTATTCCTAAATAGTCTCTGTCCTAACATCTTTCG
ATGGTTCCTGGTTTAGTTTGGCTCCCTCCCTAATACCTCATACCATCTTA
ATGCCTATATAAAG
TATATATCCATATCTTTTTTCCGTANACTCTCCTCTTTCCCCCCTTTCCT
NTTTCGATGTAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCTGAAATCCTTGTGAAAGTCATGTGTGGTGGTTTGAA
AGAAATGACCCACCGAGAACAACAGGGAGGGGCACAATTAGGAGGTGTGG
TCTTTTGGGGGTAGATACGGTCTTGATGGAGGAAGTGGTCACTGGGTTTG
GGCTTTGAGGTCTCAGATGTTCAAGTCACACCTAGTGTGGCAGTCACTTC
CTGCTGCCTATGGATCCTGATGTATACCTCTGAGCTCCTTCTCCAGTATT
ATGTCTGCATGTACGTTATTTTGCGTCCCATCATAATGATAATGGTCTAA
ATCTCTGATCTGTAAATCAGCCCCAGTGAAATATTCTCCTTTATAACAGC
TGCCGTGGTCATGGCGTCTCTTCACAGCAATATTGCTCTAACTCAGACAC
CACGTTTCCTACTGTTCGAAACTTTCCTTTCTGGTCCTTACCCAAAAGCA
TTCTTGGAATCTGTAATTTTGGGATTCTCCAGTTCCCCGATTTACAAATA
ATTTTGTAAAGGACGACCTCATCTTGTTTCGACATTTTGAAAACACTCCA
CCCCTGATGTTAAATTTCACAAGCCATTCTTCCGGCAATAGCGCGTTGAT
ATCAGGCCCCAATACAGACGCTGTTTCCTTTCTTCCCCCATTGTAGTTGT
TGGCGACTTTTGTCGTTTAATATTTCACCGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_a05.b1 MSMg01no097_a05.b1 CHROMAT_FILE:
MSMg01no097_a05.b1 PHD_FILE: MSMg01no097_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:35 2005
         (341 letters)



>mm_chr2_144491732_144492472
          Length = 741

 Score =  600 bits (310), Expect = e-176
 Identities = 334/342 (97%), Gaps = 2/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcttggactatggtttcatgctcctcgaaggtataaaggataggggtgaatctactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 541 tgttcttggactatggtttcatgctcctcgaaggtataaaggataggagtgaatctactt 482

                                                                       
Query: 61  cagatgactc-cttactgcttgctgctgttcttcaatcaaatatttaaactatgctctct 119
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cagatgac-cacttactgcttgctgctgttcttcaatcaaatatttaaactatgctctct 423

                                                                       
Query: 120 atgctttatgaaaaacatgtctttgtcgcatgcagtctgtccttctaattgtataccgct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atgctttatgaaaaacatgtctttgtcgcatgcagtctgtccttctaattgtataccgct 363

                                                                       
Query: 180 tgaactcataaggatttcattcatgtgaccctttttaaccctcagagtataaagtgtttg 239
           |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 362 tgaactcataaggacttcactcatgtgaccctttttaaccctccgagtataaagtgtttg 303

                                                                       
Query: 240 cagctttgaatacagctattgaatatttgaatacggttggctatcatatgagactttagt 299
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 302 cagctttgaatacagctattgaatatttgaatacggctggctatcgtatgagactttagt 243

                                                     
Query: 300 ccctctcattcactggttccattcccccaggtcccaccagct 341
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ccctctcattcactggttccattcccccaggtcccaccagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)