BAC Information

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BAC

Clone NameMSMg01-097H13
Chromosome2 (Build37)
Map Location 105,022,328 - 105,196,962
singlet/doubletdoublet
Overlap gene0610012H03Rik
Upstream geneD430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1
Downstream geneRcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097H13.T7 (MSMg01no097_h13.b1)MSMg01-097H13.TJ (MSMg01no097_h13.g1)
ACCAG313893AG313894
length755752
length of high quality
(start - end)		236 (188 - 423)176 (194 - 369)
definitionCHROMAT_FILE: MSMg01no097_h13.b1 PHD_FILE: MSMg01no097_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:13 2005CHROMAT_FILE: MSMg01no097_h13.g1 PHD_FILE: MSMg01no097_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,196,727 - 105,196,962)(105,022,328 - 105,022,503)
sequence
NNNNNNNNAAAANNNNNNNNNNNNNNNNNNNNNTTTTCCCCNNNNTTCCC
TCGCCGGGCCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXGCCGCGGAATTCCAGCTGTTACGAGAGGAGACTGATGACAGGCTGT
GGTGCAGACTTTAGCTGGAAAGCCATGGGCAGATGGGGCTGGAGTGGCTA
TCCAGAGCCAACTGAAAAAACAAACAAGCAGAGGAAGCCAGCAAAACAAA
GGAGGCACAATGAACAGACAAGAGTTAGCATGAGAACAGGAGCCAAGGTC
CTGAGTGACAGTGCGAGACAAGAGTGACCTTCATCCTTACAGTAAGACAG
CACTAGTCTCTACATCATCAGAGCTAGCCTGAGTAATCCCCCATTCCTGG
TTTTAGAGGACCACAACACAGACCATAGATAGCAGAACGAACACTATTAG
GAGAGCTTTCATTTCTGGTACCTACTAAGTGCTAAGCAAACACGAATGCG
GTTCTTCCCACGGACTTGATTGCAAGAGCGAAACCACAGCAAACCATCTC
CACTTGGCGTTCTCTCTGTGCCTCCTTCCCATCCTCCAAACCATGATCGA
ACTTGCCCTATAAGATATACTGCACAATTAGCGTGCACCTCCTACCCTTG
TCTAATTAGCTCTTTTTATCCATTAAGAATATTTTTCCCATTAATCCCAC
CGGTTTGAGGGTATTAGAAAGCAGCCCCCTTTCTTGATTTCTAAAACCTC
TGAGT

NNNNNNNNNNNNNNNNNNTTTTCCTTTTTTCCACCCTTTTTCCCTCTCAC
CNNCCNTTCTATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATACGTAGTGTGATAT
GGCGTTGAAACCAGAGGATTGCTCTGTCGGGACAGGGGTGGGGAAGTCTC
ATCCCCGCTGAACTTCTGCCACTGATAAAGCAGGGTCTGCTGGCAGAATT
CATTTTTCACTGGGCCATCTGCATCCAGTCAAACATAACTTGTCTTTCTA
AAAAAGCTACCCGGCAACCTCGACCCGACACAACCTCCTCCTGAAGCATC
GGGCGCTGCTCCTGGTGCCGGGTCTTGTTGGGCTGGATGGTGTCAACCAA
CTGGGGTCATCATAATATACATGGAAGCATTGAAGTGGCTGGGTGTTTAT
GTGGCTGATGCCCTGTTACATTTTTATCAGTTCGAGTTATTGCCAGCGAA
GCTCCGTGTTAGCTCGTCTATAAATCTTTTGAACAGTGTTTTTATTTCTT
GAATTTTGCCATTGCTGTCATCAGCTTTTACCACTTGTTTATGTAGAGCC
CATTACTACTCTTTCTAGTCGCCTTGTTCTCCACCTTTCTCATTCACTGA
TTTCTTTCCCCCGGTCCCCTAATGGGAAGTGAATTCCGAGGCTTTTGGGG
CAGCGAATATGAAGCATGCCTTATGGTGCGACAGCGGAATGCCCTCTTGC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_h13.b1 MSMg01no097_h13.b1 CHROMAT_FILE:
MSMg01no097_h13.b1 PHD_FILE: MSMg01no097_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:13 2005
         (236 letters)



>mm_chr2_105196527_105197162
          Length = 636

 Score =  412 bits (213), Expect = e-120
 Identities = 231/237 (97%), Gaps = 2/237 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctggagtggctatccagagccaactgaaaaaacaaacaagcagaggaagccagcaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gctggagtggctatccagagccaactgaaaaaacaaacaagcagaggaagccagcaaaac 377

                                                                       
Query: 61  aaaggaggcacaatgaacagacaagagttagcatgagaacaggagccaaggtcctgagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaaggaggcacaatgaacagacaagagttagcatgagaacaggagccaaggtcctgagtg 317

                                                                       
Query: 121 acagtgcgagacaagagtgaccttcatccttacagtaagacagcactagtctctacatca 180
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 acagtgggagacaagagtggccttcatccttacagtaagacagcactagtctctacatca 257

                                                                    
Query: 181 tcagagctagcctga-gtaatcccccattcctggttttagaggaccacaacacagac 236
           ||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||
Sbjct: 256 tcagagctagcctgaag-aatcccccattcctggctttagagcaccacaacacagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no097_h13.g1 MSMg01no097_h13.g1 CHROMAT_FILE:
MSMg01no097_h13.g1 PHD_FILE: MSMg01no097_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:13 2005
         (176 letters)



>mm_chr2_105022128_105022703
          Length = 576

 Score =  325 bits (168), Expect = 1e-93
 Identities = 174/176 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtctcatccccgctgaacttctgccactgataaagcagggtctgctggcagaattcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtctcatccccgctgaacttctgccactgataaagcagggtctgctggcagaattcat 260

                                                                       
Query: 61  ttttcactgggccatctgcatccagtcaaacataacttgtctttctaaaaaagctacccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcactgggccatctgcatccagtcaaacataacttgtctttctaaaaaagctacccg 320

                                                                   
Query: 121 gcaacctcgacccgacacaacctcctcctgaagcatcgggcgctgctcctggtgcc 176
           ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gcagcctcgacccgacacaacctcctcctgacgcatcgggcgctgctcctggtgcc 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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