BAC Information

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BAC

Clone NameMSMg01-097J03
Chromosome2 (Build37)
Map Location 15,616,106 - 15,616,349
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb2, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
Downstream geneLOC625457, Plxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097J03.T7 (MSMg01no097_j03.b1)MSMg01-097J03.TJ (MSMg01no097_j03.g1)
ACCAG313966AG313967
length701756
length of high quality
(start - end)
621 (45 - 665)245 (426 - 670)
definitionCHROMAT_FILE: MSMg01no097_j03.b1 PHD_FILE: MSMg01no097_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:21 2005CHROMAT_FILE: MSMg01no097_j03.g1 PHD_FILE: MSMg01no097_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA
TTCAAGACCATCCCGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTAC
ACAGAGAAACCCTGTCTCAAAAAAGAGAAAAAAAAACAAAAACAAAAACA
AACAACAGCAAAAAAAGATACAATGAAATTCACACAATAATAGTGGGTGA
TCATACTCTCACCAATGAACAGATCATTGAAACAGAAACTAAACAGAGAC
ACAGTGAAGCTAATAGAAGTTATGAACCAAATGGAATATATATATGCTAA
CAGAATGCTAACAGTGTTGATGTTAGTAAAGCCATTTTGGAGGGAATAGA
AGGATTTTAATGACTTTTTCTATTTCCCTAGGGGAAATGGGACTGTGTAG
GTAGTTTAGCTGCTCTTGATTTGACTTTGGTACATGGTATCTTTCCAAAA
AGTCATACACTTCAGCCAAACTTTCCAGTTTTGTTATGTGTGGGCTTTTG
AATAAGACCTGATGAGTTTTTTAATTTCCTCAGTTGCTGTAGTTATATCT
CCTTTCATTTCTGGTTTTGGTTAATTTGTATATTGTCTCTGTGCCCTTTA
GTTAGTTTGGCTAAGAGTTTATAAGTCTTACTGATTTTCTCAAATAACCA
GCTTTTGTATTGGCTCTTTGTATCATTCTCTTTTTTTCTAATTGGTTGAT
N
NNNNNNNNAAAAAAAAAAAACCCAACCNNCCAACCCCNCCCCCTCCCNCN
NNCCCCGATGATATGGGTGGCCTGGGGGNCGCCTGGTTTCGGGATGGGGG
NGAACNANAGAAGTTTTCAAAAACACGCAANNNCANAAANACANNTTTCC
CAAACANNCNTTNCAAGGAACCACCCCCATTTAGCTTTGTTGGTTAAGGA
ATTGCTAACATTTGTTACATCATTCTAAAAATCGCTTAATTTCTCCTCCT
TCAACATTAGCAGGGAGTTTGTTTCTATAGGAGTTTGTATTTCAAATATT
GGCATGTGTGTCACCTGAACTGTGTAGAAGGTAGAATGTTTTCCGAGAAA
ATATGCCTAGAAATCAGTTATTTTTTTTTTACCCNNCNAGGGAACAAATA
AGGGAANTGGCAGGAAGAACACACGCCATGAACATCAAGAGNGCAGCATT
AGGGGTGCCTACACAAGAACCTCGGTGCTCAATATTTCATACAGTTCCAC
AAGGTCCCTATGCCAAAGGTGATGAAGACGGGGCTTCTTTATGAAGAACA
AAAGGGAGCTTAGGGAAAAGTGTGCAATGTCATCAAGGCCACAAATGAGC
AAGTTATAAAATATCCTTTAATATAATAGTTCGGAAAAAAAGAGAAAAAT
CTGGTTATTACATTGGAAAAAAAGAAAAGCCAGAAGGCATGATCTAATTT
CCCTTAGTGTAATGTTTAGCCAGTGAAAAATGATTGCCATTTGGGATTGA
ATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_j03.g1 MSMg01no097_j03.g1 CHROMAT_FILE:
MSMg01no097_j03.g1 PHD_FILE: MSMg01no097_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:22 2005
         (245 letters)



>mm_chr2_15615905_15616549
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   catgaacatcaagagngcagcattaggggtgcctacacaagaacctcggtgctcaatatt 61
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catgaacatcaagagtgcagcattaggggtgcctacacaagaacctcggtgctcaatatt 386

                                                                       
Query: 62  tcatacagttccacaaggtccctatgccaaaggtgatgaagacggggcttctttatgaag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatacagttccacaaggtccctatgccaaaggtgatgaagacggggcttctttatgaag 326

                                                                       
Query: 122 aacaaaagggagcttagggaaaagtgtgcaatgtcatcaaggccacaaatgagcaagtta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacaaaagggagcttagggaaaagtgtgcaatgtcatcaaggccacaaatgagcaagtta 266

                                                                       
Query: 182 taaaatatcctttaatataatagttcggaaaaaaagagaaaaatctggttattacattgg 241
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaatatcctttaatataatagtttggaaaaaaagagaaaaatctggttattacattgg 206

               
Query: 242 aaaa 245
           ||||
Sbjct: 205 aaaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)