BAC Information

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BAC

Clone NameMSMg01-097O21
Chromosome2 (Build37)
Map Location 160,052,215 - 160,052,546
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043689
Downstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097O21.T7 (MSMg01no097_o21.b1)MSMg01-097O21.TJ (MSMg01no097_o21.g1)
ACCAG314238AG314239
length813679
length of high quality
(start - end)
---335 (57 - 391)
definitionCHROMAT_FILE: MSMg01no097_o21.b1 PHD_FILE: MSMg01no097_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:51 2005CHROMAT_FILE: MSMg01no097_o21.g1 PHD_FILE: MSMg01no097_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAACAAAAAAATACANANATTAAAATATAANCCCCNNNNCCCTTCTGA
TTNNGGAATTAGAATTTGGGCGCNNAAAGAGNACTATTTCGNGATCGCCG
NGGAANCAAGCTTTGCAACACAGAGAGNNNNNAANGGNANNGNNNGAAAN
NNNGNAANAAAAGGGTANCTCCCAAAAAGNNNNGGGGGNAGGGGAAGAGG
NNGAGANAAGAGGAAAGAGGGAGGNNGGGNAAGGNAAATTAAGAAGNGGN
NNNAAGAAGAGGGAAGGAGGGAGGAGAANAGGGANAANTNGAGGGAGAAN
TTTTAANANAGTGTATAAATTGGGAATAATTGGAGAAAATTGTGTTTAGT
TATGGGAAGGGTTTCTTTTTTTTGNANGGACCNGNCCCCGGAGAAAAGAG
NAATTTTTTTTTTTTGCCCCCCCCCCCCACGGGGGGAGTGTAAGGGGAAG
GGGGGGNGGGGGGNNNAGNGAAAAAAAAAAAAAAAAAAAGNGGGGGGGGG
GGGGGGGNNGNNNNNNNCGGNNAAGAGGTAGACTGGGAGCAGGGTGGTTC
AAAGGAGGGGGTGAGGATGATTGTTTCGATGCAAAAAGTGTTTGTTTGGG
ATAAATTCTCAATTGAGGTATAATTCATTTGGGTGTTTAGGGGTGGGAGG
TATGTGAAATTTGTATAGAAAAATTTATGGTTTATGTGTGGTATTGGGAG
AGATAAAAGTTGGGGGTGGGTAGGAATTTGGGGCGGTTTATAATCGGGAA
GGGATTTATTTTGTTTTTGTTGGAGAGAGTTATGATTTGCAGCGCTGAGG
TTTGGTTTATCGG
GGCGGCCGCCTGTTTCCCGAATTTAGGTGAACTATAGAAGTATCCGCGCA
ATTCTGTGTAGTTTAACCTTTCTCTTGGCCATTGTTTTGACCAACTAGAA
AGTGAGTTCTGATGACTCATGGACCCCCAACCTGCAAGTATCTAAAGAGT
AATTCACTGTAGATGATCCAGTCTGTGGGGATGGCTGTGCAGAGTGTGGC
TCACACCCAAACCAAGGGCTGTAGTTTTTTTTTTTTTCTTGGCCTCAGCC
TTCAGTATTGCTTACAAACACTGGAAAAAGAAGAGAGACCACTTTGAAGT
CTACTTCTCGGCATCTATTACAATTACAGCAATTTATAAGTTTTGAAACT
TGAGCACCCATCACAGGGAATAAGTGGAGCCGTGAAGAAACAAAACGGGA
AATGCCCCTCTAATTCTTTCGGATGGCTGCAAGAAGAAGCCATGGAACAA
TCCACACAGAATGAAAACTAATGCGGGACCCTCACCTTGTCTGTCTTATG
AGCATTTTTACCGAGAATTGCACACAGTCATCGTGGCGGCCTCCAGAGAG
GGTGATTATCGTTGAGGGGCAGCTTCTGCCTGCTCAGCAATATTTTAAGA
GAACACAAGGACTTATATACTTTGTAACAAGTGAAAGCGAATTAAAAAAT
AAAATAACCCGCAAAAATTAACTAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_o21.g1 MSMg01no097_o21.g1 CHROMAT_FILE:
MSMg01no097_o21.g1 PHD_FILE: MSMg01no097_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:51 2005
         (335 letters)



>mm_chr2_160052015_160052746
          Length = 732

 Score =  571 bits (295), Expect = e-167
 Identities = 324/335 (96%), Gaps = 3/335 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagtttaacctttctcttggccattgttttgaccaactagaaagtgagttctgatgac 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgtagtttaacctttctcttgggcattgttttgaccaactagaaagtgagttctgatgac 473

                                                                       
Query: 61  tcatggacccccaacctgcaagtatctaaagagtaattcactgtagatgatccagtctgt 120
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 472 tcatggacccccaacctgcaagtacctaaagagtacttcactgtagatgatccagtctgt 413

                                                                       
Query: 121 ggggatggctgtgcagagtgtggctcacacccaaaccaagggctgtagtttttttttttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  
Sbjct: 412 ggggatggctgtgcagagtgtggctcacacccaaaccaagggctgtagattttttttt-- 355

                                                                       
Query: 181 tcttggcctcagccttcagtattgcttacaaacactggaaaaagaagagagaccactttg 240
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 354 -cttggcctcagccttcagtattgcttacaaatactggaaaaagaagagagaccactttg 296

                                                                       
Query: 241 aagtctacttctcggcatctattacaattacagcaatttataagttttgaaacttgagca 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aagtctactactcggcatctattacaattacagcaatttataagttttgaaacttgagca 236

                                              
Query: 301 cccatcacagggaataagtggagccgtgaagaaac 335
             |||||||||||||||||||||||||||||||||
Sbjct: 235 gtcatcacagggaataagtggagccgtgaagaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 732
Length adjustment: 9
Effective length of query: 326
Effective length of database: 723
Effective search space:   235698
Effective search space used:   235698
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)