BAC Information

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BAC

Clone NameMSMg01-098D15
Chromosome2 (Build37)
Map Location 25,740,038 - 25,740,277
singlet/doubletsinglet
Overlap geneKcnt1
Upstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1
Downstream geneCamsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D15.T7 (MSMg01no098_d15.b1)MSMg01-098D15.TJ (MSMg01no098_d15.g1)
ACCAG314462AG314463
length692823
length of high quality
(start - end)		84 (182 - 265)241 (122 - 362)
definitionCHROMAT_FILE: MSMg01no098_d15.b1 PHD_FILE: MSMg01no098_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:16 2005CHROMAT_FILE: MSMg01no098_d15.g1 PHD_FILE: MSMg01no098_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCAGAAGAGATCCGCGGAATTCTTCATTGCCCCAATTTACAAGTGAGA
TGTAGGGAAAGTGAACTCTATCTGGTGGTTCAGTAGATGCGCCTTGGCCG
GTTGTGAAAAAGGACCAAGACATCTTACAGTAAGAAGTGCTCTGTAGAGA
GCACGGCTGACCTCATTGCAGGATGAAGTGGGTCAGGGGTCATGGTATTC
CCTAGCGGCAGGGTGTCTACCTTGATGATATTTTGTGACCCCACTTACAG
GGAAGTCCTGGTGTTTCATCCACGCCGGCAAGGGACTTTGTGGCGAGTCT
CCAGGCAGGGGCCAAGCCATCTGGGATTCAGAAGATGGTCTCTGGTTGTG
AATCTCAGTCTGGTTCTCAGCAGTCAGGAGATCACAGGCCAGATCCTCAC
GGAGCATAGCTTAGGTCCGCCACGGGCAGACGTATGGCAGGAGTTGTGAA
GGTAAGCCTGGCCCTTCCCCTCCACCCGACCTACTCCTTCTTCATCTTCC
TTCTGAGAGTTCACCATCTGCGCCGTTCATACTTTTCTTAGTCCCGTCCT
CCCTTCTTTATTTGCTTCCGACCCTTTTTTCTTCTTCATTCTTTTCCCCT
CTCAACCAACTTTCATCTTCTCGACGTATTGTGTGTTTGCTCCCTCTATA
TGTATATCACGTTACTCGCCTCTTGCCCTTTGTTCTCCCTCA

NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCNCNCATCCCCC
CCCACGATGATAGTGGGTGGCCTGGCGGCCGCCTGTCCAAAGAAGGTAGG
TGACCTATAGATTTCCCGCGGAATTCTTTTTTACTTTTAAATTTTAATGG
CCTGTGGCCACCCACTTCCTCTACCACCACACAAAGCAGGGATTAAAAGT
ATCCATTTTACTCCAACCTATGTTTAAGATACCCTAAGATGAAGACGCAT
CGCACAGCCCTACGGGAGCAGAGGGAGTTTATGAATGGCCTGCCCCTCTT
ACAGCCTCTGCTCAGAGGCACCTTTGGACCTATAGGATCTAGGCCCGAGA
TGGCCTTCTGGCTGCACTGACTTTGACCCGTGGGGTGCCGCTTCCCCCGT
TCACCAATCTCATTCTCCGCTTTGTCCGAGTAAAGACTTATTCAACCCCA
TTCTAACTCCACCCCCCACATAACCCCCCTTACCTCTCTTTTTCCTCTCA
TCCTTCTATTCTCCATTTATTCCTCATCACTCCCTTCCCTATTTTTAGCC
ATCAACTCTCCCATCTTTCCATTCTTTTTTCCTTTCTTTTCCCCTCCTCT
CCTCCTTTGCTTCTACTCTATTCGCCCCACTTGCACTTCCTTTGACCCTT
TCTCCCCCCACTTTTTTCTCTATTATCTAACAACATCCACACTCATTACT
TTTTTAACACATTTTTCCTTACCTTTCGCAACATATTGAGGACCCAAATA
GCCAATCTCCCTCACTCTACGCGCGTCACCCACTTACCCACTCTCCGTTT
TATTCCACACAACTCACCATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d15.g1 MSMg01no098_d15.g1 CHROMAT_FILE:
MSMg01no098_d15.g1 PHD_FILE: MSMg01no098_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:16 2005
         (241 letters)



>mm_chr2_25739838_25740478
          Length = 641

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcttttttacttttaaattttaatggcctgtggccacccacttcctctaccaccaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 aattcttttttacttttaaattttaatggcctgtggccacccacttcctctagcaccaca 381

                                                                       
Query: 61  caaagcagggattaaaagtatccattttactccaacctatgtttaagataccctaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaagcagggattaaaagtatccattttactccaacctatgtttaagataccctaagatg 321

                                                                       
Query: 121 aagacgcatcgcacagccctacgggagcagagggagtttatgaatggcctgcccctctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagacgcatcgcacagccctacgggagcagagggagtttatgaatggcctgcccctctta 261

                                                                       
Query: 181 cagcctctgctcagaggcacctttggacctataggatctaggcccgagatggccttctgg 240
            |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 260 tagcctctgctcacaggcacctttggacctataggatctaggcctgagatggccttctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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