CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCTGGCTGCAGTTTCTTAGCTGTCATTTAAAGTTTGAAAATTTCATT
CTTAAAAGCAGAGATAGCGTTTTTCACCTATTAGATTAACAGAACTGAAA
AGACAGACTCGGTAAAGGTGCTGGGGAAAAGCTCTAGCTACCGTCGGGGG
CAATTTTAATGGAGCTGATTTAGCAAACCCCATAATGCTTTTTTTAAACA
TGCATGCCACTTGATTCTGGAAATCTACTTTATACTGTGTACCCTACAGA
ACTGCTTACACGTGGAAGCAAATGTGTCCATTGTTGAATTTTCCCCCTAG
GAGGGGAAATTTGAAAACCTACTTAAATGGACTCAAATAGAGAACATTTA
AATTATGGCACATATGTGTTCTCTTAGACAGACGGTAAGTAATTATTATA
GCACTGTCCCCTTCTTATGTCAAATTCCAATTCTTTTCCAATAGGCAAAT
AAACACTTTTGTTTATTAAACATTTTTTAACATTTACTTAATTTGTTATT
TATTTATTTGGGGGCATGTATGTGTATGTGCATGTGTATGTGTGTGTGTA
CCTGTGTGTATGTGTGTATGTGCATGTGTATGTGTATGTGTATGTGCGCG
TGTGTGTGTATGTGCGCATGTGCATGTGCTGTATGTGCACGCGTGAGCCC
ATGCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGTCAATGTCAGCCTAGCTGTATAAC
AGGATCTTATCTAAAAAAAGACAGAAAGAAGAATGAGAGAAAGGAAAGGA
AGAAGAAAACTGACATCTATGTGCATGTAGGATGTTGGGAGAAGGGAATC
TAGTCAAGTGGCTGCCCTATAACTCACTATGTAGACCAGGTTGGTCTTAA
CCTCACAGAGATCCTCTGCTTCTGCCTCCTGCGTGCCGTGATTAAAAGTG
TGTGCACCACCACACCCAGAGCCCAAAGACAAAATAAAATCCAGTAATCA
AATGTATAAGTCATAAAATTTAGCAATAGTGAAAAGGTTCTGAATGCTTC
AAAACCATGAGCTCAAAATCCAACACACAATGAACCCAAGTAGTTTCTGA
CAGGGCTTGCAGGCACTGCCCTGTGCCTTCAGTGCAGCCTTTGTTCTGAA
CACACACTGTGCACTTGGTAAGGTCTATCTATGCTTTCTTGGCCAGCGAA
CACTGAATTAGCATCTCCACTGACATCTGAGATTGCTGTATGCTATAAAT
TACACTTTTCCTTTACATATATACAGAGTTTTCTGCAGTTATGGCACATA
ATTGATTAATTACCGAACATAAAGACAATGTTTTCCCATTCTTCTTTGAC
TACAGGCAAGA

Query= MSMg01no098_m08.b1 MSMg01no098_m08.b1 CHROMAT_FILE:
MSMg01no098_m08.b1 PHD_FILE: MSMg01no098_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:59 2005
         (555 letters)



>mm_chr2_116087338_116088292
          Length = 955

 Score = 1052 bits (544), Expect = 0.0
 Identities = 550/552 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcctggctgcagtttcttagctgtcatttaaagtttgaaaatttcattcttaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggaattctcctggctgcagtttcttagctgtcatttaaagtttgaaaatttcattcttaa 665

                                                                       
Query: 64  aagcagagatagcgtttttcacctattagattaacagaactgaaaagacagactcggtaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aagcagagatagcgtttttcacctattagattaacagaactgaaaagacagactcggtaa 605

                                                                       
Query: 124 aggtgctggggaaaagctctagctaccgtcgggggcaattttaatggagctgatttagca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggtgctggggaaaagctctagctaccgtcgggggcaattttaatggagctgatttagca 545

                                                                       
Query: 184 aaccccataatgctttttttaaacatgcatgccacttgattctggaaatctactttatac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaccccataatgctttttttaaacatgcatgccacttgattctggaaatctactttatac 485

                                                                       
Query: 244 tgtgtaccctacagaactgcttacacgtggaagcaaatgtgtccattgttgaattttccc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgtgtaccctacagaactgcttacacgtggaagcaaatgtgtccattgttgaattttccc 425

                                                                       
Query: 304 cctaggaggggaaatttgaaaacctacttaaatggactcaaatagagaacatttaaatta 363
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cgtaggaggggaaatttgaaaacctacttaaatggactcaaatagagaacatttaaatta 365

                                                                       
Query: 364 tggcacatatgtgttctcttagacagacggtaagtaattattatagcactgtccccttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tggcacatatgtgttctcttagacagacggtaagtaattattatagcactgtccccttct 305

                                                                       
Query: 424 tatgtcaaattccaattcttttccaataggcaaataaacacttttgtttattaaacattt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tatgtcaaattccaattcttttccaataggcaaataaacacttttgtttattaaacattt 245

                                                                       
Query: 484 tttaacatttacttaatttgttatttatttatttgggggcatgtatgtgtatgtgcatgt 543
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 244 tttaacatttacttaatttgttatttatttatttgggggcatgtatgtgtgtgtgcatgt 185

                       
Query: 544 gtatgtgtgtgt 555
           ||||||||||||
Sbjct: 184 gtatgtgtgtgt 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)