BAC Information

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BAC

Clone NameMSMg01-099A14
Chromosome2 (Build37)
Map Location 39,401,921 - 39,402,407
singlet/doubletsinglet
Overlap genenone
Upstream geneNek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099A14.T7 (MSMg01no099_a14.b1)MSMg01-099A14.TJ (MSMg01no099_a14.g1)
ACCAG315066AG315067
length703708
length of high quality
(start - end)
498 (46 - 543)499 (77 - 575)
definitionCHROMAT_FILE: MSMg01no099_a14.b1 PHD_FILE: MSMg01no099_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:20 2005CHROMAT_FILE: MSMg01no099_a14.g1 PHD_FILE: MSMg01no099_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATAGTGTGGCCCTTTGAATAAGAAGGGTCCCTATAGGCTCATTT
ATTTGAATGCTTCCTCATCAAGGAGTGGAACTCTTTGATAGGATTAGAAG
GATTAAGAGCTGTGGCCCTGTAGGTAGGTGTGGCCTTGTTGGAGGAAGTA
TATCATTAATGGTGGGCTTTGAGTATTAAAAAGACCATGCCAGGGCAAAT
CTCTATCTGCAGCCTGTAGACCAGGATACAGTTCTCAATTACTGCTCATG
TGTGCCACCATGCTCCCTGCTATGGTGGTGGACTAGTCCTCTGAAACTCT
AAGCAAACCCCCAATTCTACGCTTTCCTTTTTGAGCTGCCTTGGCCATGA
TGTCTTTTCACAACAATCAAACAATAACCAAGATACATGGTATGTTGAAT
GTTTCCATGCTCTTATATTTTATATGGGTACCTTTCTAGAAAACATGCCC
AGAATTCTTCAACAAATTTAAAGAATAATCTAGATTTTCGAAGATGAAAT
TCGGAAAGTACTTTAATGCCTCCATTTTCTTTTTGTACTGGCTACTTTTG
TTTTGTCTTCCTATCAAAATCACTCACTCCCTTCTGTTACCTTCCTTGTT
ATCCTGAGCAGATAATTTGGACGTAAATTATATCTTACTTCCCATTCTTT
TTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGATACAATTCACAGGCCACG
TGAAGTTCAAGAAGAAATAAGAACAAAGTGTGGATGCTTCAGTCTTTCTT
AGAAGGGAGAAAAAAATACTCATGGAAGGAAACACCAAGACAAAGTATGA
AGCAGAAACTGAAGGAGGGGCCATCCAGAGTCTGCCCCACCTGGGTATCC
ACCCCATATACAGACAACAAACCCAGACACTATTGCAAGTGCCAAGAAGT
ACTTGCTTAGAGAAACCTGATATAGATGTCTCCTCAGAGGCTTTGCCAGT
GCCTGACAAATACAGAGGCAGATGCTCACAACCAACCATTGAACTGTGCA
CAGGGTCCCCAATGGAGGCGTTAGAGAAAGGACTGAAGGAGCTGAAGGGG
TTTGCAACTCCATATGAAGAACAACAATATCAACCAACCAGAACCACCCC
CCAGAGCTCCAGGAACTAAACTACAACTAAAGAGTACACATGGAGGGACC
CATGGCTCCAGCCACATATGTAGTAGAGGATGGTCTTGTAGGACATCTCT
GGGAGGAGAGGCTTTTGCTCCTGGGAAGGCTTTATGTCCCAATACTGGGG
AATGCCACGGTGTTTGAGGCTAGGACTGACTGGATGCATAGCAGACCCCT
TTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_a14.b1 MSMg01no099_a14.b1 CHROMAT_FILE:
MSMg01no099_a14.b1 PHD_FILE: MSMg01no099_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:20 2005
         (498 letters)



>mm_chr2_39401714_39402611
          Length = 898

 Score =  803 bits (415), Expect = 0.0
 Identities = 471/491 (95%), Gaps = 5/491 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatagtgtggccctttgaataagaagggtccctataggctcatttatttgaatg 64
           |||||| |||||||||   ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 208 gaattccatagtgtggtggtttgaataagaagggcccctataggctcatttatttgaatg 267

                                                                       
Query: 65  cttcctcatcaaggagtggaactctttgataggattagaaggattaagagctgtggccct 124
           |||||||||||||||||||||||||||||||||| |||   |||||||||||||||||||
Sbjct: 268 cttcctcatcaaggagtggaactctttgataggagtag---gattaagagctgtggccct 324

                                                                       
Query: 125 gtaggtaggtgtggccttgttggaggaagtatatcattaatggtgggctttgagtattaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 gtaggtaggtgtggccttgttggaggaagtatatcattaatggtggggtttgagtattaa 384

                                                                       
Query: 185 aaagaccatgccagggcaaatctctatctgcagcctgtagaccaggatacagttctcaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagaccatgccagggcaaatctctatctgcagcctgtagaccaggatacagttctcaat 444

                                                                       
Query: 245 tactgctcatgtgtgccaccatgctccctgctatggtggtggactagtcctctgaaactc 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tactgttcatgtgtgccaccatgctccctgctatggtggtggactagtcctctgaaactc 504

                                                                       
Query: 305 taagcaaacccccaattcta-cgctttcctttttgagctgccttggccatgatgtctttt 363
           |||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct: 505 taagtaaacccccaattctatc-ctttcctttttgagctgccttggtcatgatgtctttt 563

                                                                       
Query: 364 cacaacaatcaaacaataaccaagatacatggtatgttgaatgtttccatgctcttatat 423
           || |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 564 cataacaatcaaacaataaccaagatacagggtatgctgaatgtttccatgctcttatat 623

                                                                       
Query: 424 tttatatgggtacctttctagaaaacatgcccagaattcttcaacaaatttaaagaataa 483
           ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 624 tttatatgggtacctttctcgaaaacatgcccagaattctttaacaaatttaaagaataa 683

                      
Query: 484 tctagattttc 494
           |||||||||||
Sbjct: 684 tctagattttc 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)