BAC Information

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BAC

Clone NameMSMg01-099G14
Chromosome2 (Build37)
Map Location 121,793,298 - 121,793,507
singlet/doubletsinglet
Overlap geneCtdspl2
Upstream geneUbr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3
Downstream geneEif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099G14.T7 (MSMg01no099_g14.b1)MSMg01-099G14.TJ (MSMg01no099_g14.g1)
ACCAG315354AG315355
length729821
length of high quality
(start - end)
210 (75 - 284)---
definitionCHROMAT_FILE: MSMg01no099_g14.b1 PHD_FILE: MSMg01no099_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:53 2005CHROMAT_FILE: MSMg01no099_g14.g1 PHD_FILE: MSMg01no099_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCAAAAAGAAATGCCAGCAGCAGACAAAGTGGCCAATCTCTTAA
CCCCAACACTCTGGAGACAGAGGCAGCTCTGAGGCCAGACTGTTCTACAG
AACCTCTCAACTTTAAGGTCCTTAAGAAGAAAATGCATGCAAGCCCAAAA
GAGGCATTGTTTTCTTTCTTTACTATAAATCTGGCCAACCTGAACCCTTT
CCTTGATCTAAATCAGAAGACAACTTGAAGGCAAGGGGAAAAAAGTCGGA
CTTAAAGCTGTAGTTCCAGAAAGGCCAATGGCCAATTCTGCTATTACTGA
GTTCTGCCTCACTTACAGAACGCTGATAATAACCAAGCTGCTCTACCCCA
AAACCAACAATAAAAAACTTGGCTGAATCACCAAAGAATTAAGACCCCCC
TGATAACAACAGAACACTAAGAACCTGAAGTACCTAATCAATCTCAAATC
CAATATAAAGATAACCCCCCCCTAGGAGATATAGGCCACCCAGTAATGCT
TCCTCTCTCTATAACACATGACCCACCAATTCCGCCTCCCCAAAATTGCC
CCCCAATCAGCGATGTTATGTTTGCCCCACGTCCCTTCATTCCCTATTCC
CCCCCCATTTTTACATTCCCCCCTGTTACTTTCTGTACCTCCAAGGCCCT
GTTCTCGGTTCTACCCGATTTGTATTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAGGAGAGCCTGTGTTATATTTTAAGAGACCATAGAGAGCGAGAGA
GAGAGAGAGAGATATAGAGAGACAGAGAGAGCGAGAGAGAGAGAGAGTAT
GACTTCTTTTCCTCTTTCTCTTCCCTTTTTCCCCCCCTCTTCCCTTCCCT
TTTTCCCTTCCTTTTTTTTTTTTTTTTTTCCCTTTTCTTCCTTTTCCCCC
CTCTTCTCTTTTTTTTTTTTTCTTCCCTTTTCTCCCTCCCTCCTTCCCTC
TTTTTCTTTTTTCCCCTTTCTTTTTTTCTTTTCTTTTCCCCCTCTCCCTC
CCTTCTCTTTCCCCCTCTTTTTTTTTTCCTCCCCCCCCTTTCTTTCCCTT
CTTTTTCCTCTCTCTTCTCCCCCCTCTTCCTTCCTTTTTTTCTCCTCTTC
TCTTTCTTTCTTTCCTTCCTTTCTTTACTCTTCCCCCTCCCTTCCCTCCT
CTTTTTTCTTTTTCCCCCCCTCCCCCCCTTTTTTTTTTTGTCCTCCTNCT
CTCCCGACCCTTCACCCCTTTCCTTTTTTTTTTTCTTCTTCCTCTTCGCC
CCCCCCTCCCTTTCATCCCCTCTCTTCTCTTCTCTTTTTTTTTTCCCCCT
CCTTTTTTTTTCTCCTCCTCTTTCTCTTCTTCCCCCCCTCTCCCTTTTTT
TTTTCTTTCACCCCCCTCCTCTTTTCCCTTCCTCTTCGCTCCTTCCCTTC
TTTCCCCCCTTCTTTCTCTCCCCTTTCTCCCCTTCCCTTTTTCTTTTCTT
TCCTCCCACTTTTTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_g14.b1 MSMg01no099_g14.b1 CHROMAT_FILE:
MSMg01no099_g14.b1 PHD_FILE: MSMg01no099_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:53 2005
         (210 letters)



>mm_chr2_121793015_121793624
          Length = 610

 Score =  391 bits (202), Expect = e-113
 Identities = 208/210 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagacaaagtggccaatctcttaaccccaacactctggagacagaggcagctctgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agcagacaaagtggccaatctcttaaccccaacactctggagacagaggcagctctgagg 434

                                                                       
Query: 61  ccagactgttctacagaacctctcaactttaaggtccttaagaagaaaatgcatgcaagc 120
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccagactgttctacagaaccacacaactttaaggtccttaagaagaaaatgcatgcaagc 374

                                                                       
Query: 121 ccaaaagaggcattgttttctttctttactataaatctggccaacctgaaccctttcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccaaaagaggcattgttttctttctttactataaatctggccaacctgaaccctttcctt 314

                                         
Query: 181 gatctaaatcagaagacaacttgaaggcaa 210
           ||||||||||||||||||||||||||||||
Sbjct: 313 gatctaaatcagaagacaacttgaaggcaa 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)