BAC Information

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BAC

Clone NameMSMg01-099M01
Chromosome2 (Build37)
Map Location 9,389,764 - 9,390,007
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040710
Downstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M01.T7 (MSMg01no099_m01.b1)MSMg01-099M01.TJ (MSMg01no099_m01.g1)
ACCAG315616AG315617
length1,359674
length of high quality
(start - end)
---248 (41 - 288)
definitionCHROMAT_FILE: MSMg01no099_m01.b1 PHD_FILE: MSMg01no099_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:23 2005CHROMAT_FILE: MSMg01no099_m01.g1 PHD_FILE: MSMg01no099_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTTATTCTACCTCTCTCATACCACCCAATTTCTTTTACTCTTCTCTT
TTATCTCTCTTTCCTATATACCTCCCTAACACACCCTCCCTCTTTCCCTC
TAATAAAATTTGCGCCGACGCCTTAATACAGAATTCACTATTATCCAGAA
GAGAGAGCGCGCGAGCAATTCCTCTCTTCTCTCCCCTTTATTTAAACACT
GCCATACACTCTCATCTGCACCTTCTATAATCATTCTCTCTCTTTATATG
TCCCTTGTCCCTCCCTCGCACTACTGCACTACTCATGATAGCTATCCTCT
TATCCACTTATCCCTTGTAGCCTTCCCCGCCCCGCATCTGTCACAATATA
TACTTATCACATACATAATGTCACATGTGTCTTTCTCTTGCACTATTTAT
ATCAGCAATATAACGACAATCATATATCTTTTGGCCCCTCTATTCCCCGC
TATATTATATCCTTATTTAATTCCCATGTACTTTCTTACTCATCCATATC
CACCGGTCACATTCTTGCTCATATATTTCCCCCACGCCCTTCGTAATTTT
TTCTCGCGTTTATCTTTCTCTTACCAACCGCTAATCCGCATCCCCTATAT
TACGTAGACCACCCCCGTACATAATGTCGAAAAATATACACCTACATTCG
CCCACCCTTCCGTACTCAATTATTTCTCACACTATTTCCACCACCATCAT
TCAGCAATCCCTAAACACTATACGCTTTCACTCCGCCTTAACTTATCTTT
TATTTTTATATCCTATCTATTAACACAATATTGTTTCATTATAGCTACAA
TAATCTCCACTACTATGATAAAGACAGGTACATTTCGAAGCTGTCCTTAC
ATCTAATACTTCTTACACTGTTATTAATAAGTAAGTAATATCGCACAACC
GTCTCCTCTCACACTCTATTTATATATACATGCACTACTCCACAATCTGT
TCTATCCTCACTCTTTCACGTATCACCTCCACTACACACACATAGACTCA
TATTTATTCACTCCTTACTATCCTCTCCTATATATTATATTTTTTCTCTT
CTGTCNACCGCTCTCATTTGTCTATACCTCGCCTCTCTATATTTTCTTTA
TATCCAATACAACACACTCTATAATCACTATATCTATATAGTCTCCTTTA
TATATATTCTGCCTATCTANATCGACACTACTTCGCATATTACACAATAT
CATANCTATATATCTTACAATATCCTATCACTCTATATACAACTCCACCC
TATACTATTATCTCCTCTCCGCGCGCTCTTTTACATTATTATATTATCGC
GTCGTCTCTCATGTCTTTCTGTTGCTCTCGCCTCTTCTCACCTATCACTA
TCTATCTCN
CCTGGACTCCAAAAAATGGXXXXXXXXXXXXXXXXXXXXXCAGAAATTCC
TTTATTTTATTGTCTTCCAGGCTTCTTTCTCTACAAGGCAGCAAATTGTT
ATGAGATTTGAACAAGTTAATAATGAGGACAGTTAATAACAGCGAACATT
CAGAACAGTGAGTTATAGTGAACTTAGGACCAAAGTTGCCACCTTCACAT
TTGAGGTCATGGCCCACGCAAGGGTCATTGGAGAACTTTCAAATACAAGG
CTTTCTGAGCTCTACTGCAGGACCTATGATTTAGCTAATGACGAAGCTTT
TGTTGATGGACCTCTAAATATGAGGATAAAAGGATTATCACAGCAACCTT
TATTCTAGATCATGGAACCTTGGAGAACGCTATCTGGGAAGCCTTCCTTA
CACGGCTCATGGCTTCATGACGCGATTAGATTTGATTTCACTCCTCTTCT
GGACTGGACTGAGGATCATCCCCAGGACTGTTAATTACTAAGGAACCACT
CTCTGACACTAATCTGTATCTTCCGCCACAGACACCACCCGTTTTATATG
TACTTCCCAGCCCTTAAGGCTATTTTGAACCTCGACATCTGCCCCCTGAA
TGACGTTCTTCTTTGCGTGTCTCACCGGCTTCCTTCTGGTAGGCCCCGAA
CCGCGCGCCTGTTTCTGTGTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m01.g1 MSMg01no099_m01.g1 CHROMAT_FILE:
MSMg01no099_m01.g1 PHD_FILE: MSMg01no099_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:23 2005
         (248 letters)



>mm_chr2_9389560_9390207
          Length = 648

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   aattcctttattttattgtcttccaggcttctttctctacaaggcagcaaattgttatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 448 aattcctttattttattgtcttccaggcttctttctctacaaggcagcaaattgttatgt 389

                                                                       
Query: 65  gatttgaacaagttaataatgaggacagttaataacagcgaacattcagaacagtgagtt 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gacttgaacaagttaataatgaggacagttaataacagcgaacattcagaacagtgagtt 329

                                                                       
Query: 125 atagtgaacttaggaccaaagttgccaccttcacatttgaggtcatggcccacgcaaggg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 328 atagtgaacttaggaccaaagttgccaccttcacatttgaggtcatggcccaagcaaggg 269

                                                                       
Query: 185 tcattggagaactttcaaatacaaggctttctgagctctactgcaggacctatgatttag 244
           |||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct: 268 tcattggagaactttcaaatacaaggttttctgagctctattgcaggacatatgatttag 209

               
Query: 245 ctaa 248
           ||||
Sbjct: 208 ctaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)