BAC Information

Click to search

BAC

Clone NameMSMg01-099M03
Chromosome2 (Build37)
Map Location 24,572,919 - 24,573,167
singlet/doubletsinglet
Overlap geneCacna1b
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938
Downstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M03.T7 (MSMg01no099_m03.b1)MSMg01-099M03.TJ (MSMg01no099_m03.g1)
ACCAG315620AG315621
length845793
length of high quality
(start - end)		---250 (145 - 394)
definitionCHROMAT_FILE: MSMg01no099_m03.b1 PHD_FILE: MSMg01no099_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:23 2005CHROMAT_FILE: MSMg01no099_m03.g1 PHD_FILE: MSMg01no099_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGTCTACTCTATTCCTTTTTTCTTATTTTTTTTATCTATTTCTTTTC
TTACTTAACACCCCCCTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTCAAGAAGAGCCGTGGAATTCTTGCTATGCCCATTTTTCAAGCGTAGT
TTCATTTCCTGTATATATAGAAAAGCTGTTCAGCTCATCGCACTACTTCT
GATGGCCAGTGCATATACAGTTCGTCTTGTCAGATGAGTTCTGAGTTCCA
GACATGAAATGTAATTACTGCTGGCTTTTTTTTTCCCACTGGGTGGTATC
TGTATTCAGATATGAGGAGGTTATAATGTATATTGTCTTATAATATTCTA
CCATGTACCCCAGTGCTTAATATATGAGTACATCTTAATTACTGTGTATT
TTATGCACCTGACACTATGTTTTTATGAGCCTAGTCCCTGATATTTACAA
TCCCTGGGCACCGTTTTGACTTTTCCTGAATGCTTATTTATGTGCGCACC
TGTTGTTATGCTGACTGCAGAATCTGCTTGCTCATGTATGCGCAGACTTG
CTTGTCTTCGTGGCCCCAGCCATCTTCAAGTTTATCTTGTTCACTTGTTT
TTATGATTCTCTGCTGTACGACACGCGACCGTTTTTATTTTTTGTTAACG
CTTTATACCCCCTTTATTGGGTATAAGCCTATTGCTTTCTGTATTCTTTC
CTGCCCAAATACCGCTATCGGTATACATTGTCGTTTTCTACTATCTTCCT
CTTTCGTCGCCCTTCTATTGCAATACTCCATCTTCCTGTTTTTTCTCTAC
CCACACAACAATCTTCCACACGCATCTCCCCTTCTTATTTTTTTA

CCCTTCTTCCCGCTTTTTTTCCCTTTTTTTCCCCTTTTTTTCCCCCCCCT
TTTTTTTTTCTCCCCCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAA
ATGCAGAAACCTCTACCCTTAGTACACCTTCCCTGGGGAGCCTATCTGTA
GAGACTAAGACACTGCTAAGAAAAGACAAATGGTTATGAGAATTTAGAGC
AACATTTCTCATTTGAGAAAAAAAATAGAAAAGTACATGACGAGGCTGCA
GGTAAAGCCAGCGATGGAGTGTGGCACAGACAACGGCAAGCAGGGAGCTG
AATCCAGGTGCGATCTCACTCTGGGGCAGTCACTGCCTCAGAGTCTAGGA
GCTAGATGGAGCGCTATGTGGCCTTGGTACTGTTGGGGTCCGCGCCTCTC
CTACCCAGCCGCATGATAGTCTGATTCATCCCGTTATGATGAACCACATT
ACGTTTTCCAAAAGGCAAATGCCAGGTATTTGTGGCACTGAGGTATAGAA
CATTCCCAGCTCTGTTTGAAAAAACAACCAGTCTCATTTCACTATCCAAG
ACCGAGGATCCTTATGCTGGGAACTATAGGCCCCTGCCCCGGATAGGTAG
GTATTCCGGACCCCAATCAGAAACTGTCCCTTCCCTCCTGGGTTCCCCCG
ATCAAAGCGATATTATGTCCCGTCATCTATGCGCTCTCCTTTCTACGTTC
CATTTCCCACACAGCCAACAGCCTACCTTGTATCAATACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m03.g1 MSMg01no099_m03.g1 CHROMAT_FILE:
MSMg01no099_m03.g1 PHD_FILE: MSMg01no099_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:23 2005
         (250 letters)



>mm_chr2_24572719_24573368
          Length = 650

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaaaatgcagaaacctctacccttagtacaccttccctggggagcctatctgtagaga 60
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 201 tcaaaaatgcagaaacctctacccttagtacaccttccctgaggaacctatctgtagaga 260

                                                                       
Query: 61  ctaagacactgctaagaaaagacaaatggttatgagaatttagagcaacatttctcattt 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagacactgctaagaaaagacaaatggttatgagaatttagagcaacatttctcattt 320

                                                                       
Query: 121 gagaaaaaaaatagaaaagtacatgacgaggctgcaggtaaagccagcgatggagtgtgg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gagaaaaaaaatagaaaagtacatgacgaggctgcagggaaagccagcgatggagtgtgg 380

                                                                       
Query: 181 cacagacaacggcaagcagggagctgaatccaggtgcgatctcactctggggcagtcact 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cacagacaacggcaagcagggagctgaatccaggtgtgatctcactctggggcagtcact 440

                    
Query: 241 gcctcagag 249
           |||||||||
Sbjct: 441 gcctcagag 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |