BAC Information

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BAC

Clone NameMSMg01-100E19
Chromosome2 (Build37)
Map Location 130,059,702 - 130,227,875
singlet/doubletdoublet
Overlap geneTmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446
Upstream geneA730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb
Downstream gene1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100E19.T7 (MSMg01no100_e19.b1)MSMg01-100E19.TJ (MSMg01no100_e19.g1)
ACCAG316035AG316036
length788777
length of high quality
(start - end)
357 (104 - 460)288 (136 - 423)
definitionCHROMAT_FILE: MSMg01no100_e19.b1 PHD_FILE: MSMg01no100_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:07 2005CHROMAT_FILE: MSMg01no100_e19.g1 PHD_FILE: MSMg01no100_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,059,702 - 130,060,055)(130,227,589 - 130,227,875)
sequence
NNNNNNNNNNNNNNNNNTTTTNCCCCCCCCCTCCCCCNTTCCCCCGATCC
CNCCCTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCACAGGTTTCAGCAGCAGGGAGTATTCAGGGAGTACT
GAGAGGCTGGGCCAGGTAGGATGAAACAGACAGCCAACAAGGAAGGCCCA
GGTACTTTAATCCAAACTTGCTCAAGGATGTATTAACCTGATCATCTAAC
CAATATCCTCAAGAGCTGCTGAGTTTTTATTCAATACTTATTTATTTTAT
TTTATGCATATGAGTATTTTTGCCTATGTATACGTATGTGTACCACATGT
GTACCTGGTGCCCAGGAAGGTCAGAGGAGGGTATCAGATCCCATGGACCT
GTAGTTATAGACATCTGTAGCCACCATGCTGTTGCTGGGAATAGAGCCTG
GGTCCTCTGTAAGAGCAACAAGTGCTCTAACCACCGAGACATCTCAGCCC
AAGTTGCTGAGTTGTATATCAGAAAAATACCTACCCTCTAGCCAAGGAAA
TTAGATGGCTTATACAGACACATTTGTGTTTGAGAATAACGTTCCCAGAT
TCTCACACTGAAGCCCCACCTTGGTTTGACCCAACCTGAGCCCAACCTAT
CAAGACCTCCACTGCATAGAACATAAAACATAGTTGGAGCGTCCCGGTAC
CTTTTCCACCTTGATTATCTAACTGGACTTTTGGGCCCCCCATACGTGTA
ACTTTAAATTTCGCGGCACTATCAGCTCCCCGGTACGG
NCCCCNCCCCNNCCCCCCNCCCCCNNNCCCCNNCCCCCCCNTTTTCCTTT
TTTCTNCCNTCCTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATAAACCATTGAG
CAAGAGCAATCTTGGCATCTGAAGTAGGATTCACTATGACAGTGTTAATT
CATTAAATATGATGGAATCACGAGTTGAGGAAAAGGATAAGAGGGAGAGA
TTCTCAGATGGCTACTTAGTCACCCACATCTTGGAAATGAAGCAACCCCT
AATGGAGGTCAAGGCTCTCAGTAGAATTTGTTGATGGCAGAGCTAATCCT
GAGGGAATTGTTTAGGAATCTGTCCAGAAAGTATGATAATAAACAAAACC
CCCAGGAAACTAGAAAACATTCTCAAAAATAGAGGAAGAATATTTGAAAG
TTAGTTTTAGAAATTTCAAATAGAAAAAAAATATATTGCAGAAAAAAACC
TTTTTCTGGTGTAGTGAACTTTAGTGATATTATTCAAGGGAGTAGGGCTG
CAAGCTCCCCACTTCTTCTGGAGTCCTGCAATGATAACTGTGACCGGAGA
TGCTAATAATGCTTGTCGTTTAACCGGCCCGCATACTCCAGCTGATATGA
GGCCCCTGACTCATATACCCCAGAGGATTGCTTGGCCCGGCCCTCATGAA
AAACGATGCTCATAACTTTTGAGGTCCCCATTAATGGCCAGCCTCGCTCG
CCCCCCCCCTTTTCCGACCCCCTCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_e19.b1 MSMg01no100_e19.b1 CHROMAT_FILE:
MSMg01no100_e19.b1 PHD_FILE: MSMg01no100_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:07 2005
         (357 letters)



>mm_chr2_130059499_130060255
          Length = 757

 Score =  646 bits (334), Expect = 0.0
 Identities = 349/354 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacaggtttcagcagcagggagtattcagggagtactgagaggctgggccagg 63
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacagggctgagcagcagggagtattcagggagtactgagaggctgggccagg 263

                                                                       
Query: 64  taggatgaaacagacagccaacaaggaaggcccaggtactttaatccaaacttgctcaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taggatgaaacagacagccaacaaggaaggcccaggtactttaatccaaacttgctcaag 323

                                                                       
Query: 124 gatgtattaacctgatcatctaaccaatatcctcaagagctgctgagtttttattcaata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatgtattaacctgatcatctaaccaatatcctcaagagctgctgagtttttattcaata 383

                                                                       
Query: 184 cttatttattttattttatgcatatgagtatttttgcctatgtatacgtatgtgtaccac 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttatttattttattttatgtatatgagtatttttgcctatgtatacgtatgtgtaccac 443

                                                                       
Query: 244 atgtgtacctggtgcccaggaaggtcagaggagggtatcagatcccatggacctgtagtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgtgtacctggtgcccaggaaggtcagaggagggtatcagatcccatggacctgtagtt 503

                                                                 
Query: 304 atagacatctgtagccaccatgctgttgctgggaatagagcctgggtcctctgt 357
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 atagacatctgtagccaccatgttgttgctgggaatagagcctgggtcctctgt 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no100_e19.g1 MSMg01no100_e19.g1 CHROMAT_FILE:
MSMg01no100_e19.g1 PHD_FILE: MSMg01no100_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:07 2005
         (288 letters)



>mm_chr2_130227389_130228076
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgataaaccattgagcaagagcaatcttggcatctgaagtaggattcactatgacagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgataaaccattgagcaagagcaatcttggcatctgaagtaggattcactatgacagtgt 428

                                                                       
Query: 61  taattcattaaatatgatggaatcacgagttgaggaaaaggataagagggagagattctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taattcattaaatatgatggaatcacgagttgaggaaaaggataagagggagagattctc 368

                                                                       
Query: 121 agatggctacttagtcacccacatcttggaaatgaagcaacccctaatggaggtcaaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agatggctacttagtcacccacatcttggaaatgaagcaacccctaatggaggtcaaggc 308

                                                                       
Query: 181 tctcagtagaatttgttgatggcagagctaatcctgagggaattgtttaggaatctgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tctcagtagaatttgttgatggcagagctaatcctgagggaattgtttaggaatctgtcc 248

                                                          
Query: 241 agaaagtatgataataaacaaaacccccaggaaactagaaaacattc 287
           |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 247 agaaagtaggataataaacaaaacccccagaaaactagaaaacattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)