Query= MSMg01no100_f06.b1 MSMg01no100_f06.b1 CHROMAT_FILE:
MSMg01no100_f06.b1 PHD_FILE: MSMg01no100_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:09 2005
(399 letters)
>mm_chr2_59534961_59535759
Length = 799
Score = 700 bits (362), Expect = 0.0
Identities = 389/398 (97%), Gaps = 4/398 (1%)
Strand = Plus / Plus
Query: 4 ggaattcactctgtattcc-cagactggggtgcttgtacctcctgtgttaatccttctag 62
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtaggccacagactggggtgcttgtacctcctgtgttaatccttctag 263
Query: 63 ttgccagaaaaaccaactctacaatttgtgccaaacttgaagcaagcatttattaagttt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgccagaaaaaccaactctacaatttgtgccaaacttgaagcaagcatttattaagttt 323
Query: 123 taaacactgacaaagagatggactttggtcaggcccattccccggactttcctacctaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taaacactgacaaagagatggactttggtcaggcccattccccggactttcctacctaag 383
Query: 183 aatggtctcaagccacgagttgcagaggcttctgaggacaaatctgtaggccaccctatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatggtctcaagccacgagttgcagaggcttctgaggacaaatctgtaggccaccctatt 443
Query: 243 ttcccatgaggcattatttctcaagaactacaattcctattcattccaggaagttaacct 302
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 444 ttcccatgaggcattatttctcaagaactacaattcccag-cattccaggaagttaacct 502
Query: 303 agttcctgggcaagttcg-gtttgcaggttaattttggacattacacttgcgtgctagac 361
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agttcctgggcaggtt-gagtttgcaggttaattttggacattacacttgcgtgctagac 561
Query: 362 caaactatgagccaccatgcatgttttcttttttcaag 399
||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caaactatgagccaccatgcatgttttcttttttcaag 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_f06.g1 MSMg01no100_f06.g1 CHROMAT_FILE:
MSMg01no100_f06.g1 PHD_FILE: MSMg01no100_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:09 2005
(285 letters)
>mm_chr2_59672258_59672942
Length = 685
Score = 528 bits (273), Expect = e-154
Identities = 282/285 (98%)
Strand = Plus / Minus
Query: 1 cacggtgctcaggtgtccctcacaggaagccaccatgagaggtgttcgaccctgcttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cacggtgctcaggtgtccctcacaggaagccaccatgagaggtgttcgaccctgcttgtc 426
Query: 61 actcaggttcacgtcgcagccgcgatccaaaagcaatcggacaacctgaagaagcaccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 actcaggttcacgtcgcagccgcgatccaaaagcaatcggacaacctgaagaagcaccga 366
Query: 121 gaataatcagcactgagaagcccgtctccacaccacaaccgctttctccatctctcccac 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 365 gaataatcagcactgagaagcccgtctccacaccacagccgctttctccatctctcccac 306
Query: 181 cagcggcgtgatacgtggggctcaagcgatctttctactgcattcacttcaacaaaacct 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cagcggcgtgatgcgtggggctcaagcgatctttctactgcattcacttcaacaaaacct 246
Query: 241 tcttctatgtatctttcagttattatgtgtacgagaatcacgtat 285
||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 245 tcttctatgtatctttcagttattaagtgtacgagaatcacgtat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
