Query= MSMg01no100_i19.b1 MSMg01no100_i19.b1 CHROMAT_FILE:
MSMg01no100_i19.b1 PHD_FILE: MSMg01no100_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:26 2005
(234 letters)
>mm_chr2_71960765_71961398
Length = 634
Score = 422 bits (218), Expect = e-122
Identities = 230/234 (98%)
Strand = Plus / Minus
Query: 1 actagtccaggcgcaaggtgtcactttgtgctaaaacttgcggtggttgacagttataca 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 434 actagtccaggcgcaaggtgtcactttgtgctaaaacttgtggtggttgacagttataca 375
Query: 61 gcatactataatttataaactatcaaactgtgcactgtaggtgggaggaccttattgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gcatactataatttataaactatcaaactgtgcactgtaggtgggaggaccttattgtat 315
Query: 121 gtgaatcacagcccaacacatagctgagaagacactgagtggacttcaggacttgaacac 180
|||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct: 314 gtgaatcacagcccaacacaaagcagagaagacactgagtggacttcaggacgtgaacac 255
Query: 181 aacttgcccagtgcagcctcatttctgtcagagggagggatagagaaagatgtg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aacttgcccagtgcagcctcatttctgtcagagggagggatagagaaagatgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no100_i19.g1 MSMg01no100_i19.g1 CHROMAT_FILE:
MSMg01no100_i19.g1 PHD_FILE: MSMg01no100_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:27 2005
(501 letters)
>mm_chr2_71824014_71824916
Length = 903
Score = 938 bits (485), Expect = 0.0
Identities = 498/503 (99%), Gaps = 2/503 (0%)
Strand = Plus / Plus
Query: 1 cttcatgtttcagggaaggtcgcactggcaccagacttttgagaccttagagactagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcatgtttcagggaaggtcgcactggcaccagacttttgagaccttagagactagcca 260
Query: 61 gatcattaatttgatgttaaatctgtaccacgggacaaggggacacgctcctccgttggc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gatcattaatttgatgttaaatctgtaccacgggacaaggggacacgctcctccattggc 320
Query: 121 taatacagttgcgccagaggccagctgagcgaggaatccagttaagcagaagcacgtctc 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 taatacagttgcgccagaggccagctgagtgaggaatccagttaagcagaagcacgtctc 380
Query: 181 tcgaatttccaatgagaagctaggctgccaggagggcaggaggctcacatctccagcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgaatttccaatgagaagctaggctgccaggagggcaggaggctcacatctccagcctg 440
Query: 241 cag--tgtattctttccccagagcctcagagctgggaatcgaatcctaatcacaaggtaa 298
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagggtgtattctttccccagagcctcagagctgggaatcgaatcctaatcacaaggtaa 500
Query: 299 ttctgggggatacttgaggacagctttgctgtcccgacttctagttagatgactaccaca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgggggatacttgaggacagctttgctgtcccgacttctagttagatgactaccaca 560
Query: 359 agagctcccacggcgcactttgtccactgtaataagacaagtcagacgccgtggtggtag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagctcccacggcgcactttgtccactgtaataagacaagtcagacgccgtggtggtag 620
Query: 419 ctgcctgcttgcttctcatttcccatcccttgacattagtcactgcatgtagtcatccct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcctgcttgcttctcatttcccatcccttgacattagtcactgcatgtagtcatccct 680
Query: 479 ttatctccagcacctgctcagtg 501
|||||||||||||| ||||||||
Sbjct: 681 ttatctccagcacccgctcagtg 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 903
Length adjustment: 10
Effective length of query: 491
Effective length of database: 893
Effective search space: 438463
Effective search space used: 438463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
