BAC Information

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BAC

Clone NameMSMg01-101H21
Chromosome2 (Build37)
Map Location 178,673,214 - 178,673,465
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368
Downstream geneLOC665264, LOC100043168, LOC100039413, Cdh4, Taf4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101H21.T7 (MSMg01no101_h21.b1)MSMg01-101H21.TJ (MSMg01no101_h21.g1)
ACCAG316891AG316892
length784732
length of high quality
(start - end)
58 (135 - 192)252 (73 - 324)
definitionCHROMAT_FILE: MSMg01no101_h21.b1 PHD_FILE: MSMg01no101_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:43 2005CHROMAT_FILE: MSMg01no101_h21.g1 PHD_FILE: MSMg01no101_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTTTNNNNTTTTTTTTTTTNTTTTTNCCCTCCTNTNTCCCTTTTC
TTTTATTTTACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGCCGCGGAATTCTACAGCTTCCCCTGTAGGTCCACCCTGGATCTACCCT
GGACACTGGGTCCAAGCCCTGGCCCTGGATCCACCTTTGTCACTGGGTCT
AAGCACTGGCCCTAGACCCACCCTGGACACTGGGTCTAAGCCCTGGCCCT
GGACCCACCCTGGACACTGGGTCTAAGCACTGGCCCTGGACCCACCCCTG
GACACTGGGTCTAAGCACTGGTCCTGGATCCACCCTGGTCACTGAGTCTA
AGCACTGGCCCTGGATCCACTCTGTACTTTGTTTCTAAGCTCTGGCCTGC
AACGGCTGCCTTGCCTTGTTTTCCCCACCTCACGCAGGCCACAGTGTCCT
TTCGTGTAGGCTGTGTGTCTCCACTTCTCCTTTATTCAAAATTCTGTGTG
TCTCAGCTCTCTCATATGTTGAGTCTCATACAGTCTTCATTTCTCTTTCC
TTGAATGGAGTGCAGCTATTTCTTTGAGTCATGCTTTATATCATTAAACA
AAGTCCATACAAGCAACACTGACCATTATTCATCATGCATAACCATACTG
TAAACATCCCTTATATTAACTAGAAAACTCCCTACCCCTATGTCTTCATT
TTGTCTGTACTTTTAAATTTCTTTGATAATCTTTTCATTATCAAAATAAT
TTTTATATCAATACTCCCACCTTCTCAATTAATG
CATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACACCTGGCCAAGCCCAAGTGGCCAAGGCCAA
TTCTTTGACTTGACCTGCATCTTCACAGCCAAGGTGAATTCACAGCAGAG
ATGACTGGAGAAAAGCAGCCATGGTACCAGGATCCAACCGGAGTGTTAGC
TCACCTGAAGAGCCTCCATGAGCCATGTGGTTTCCATAGCAACACAACCA
AGTAGATCTCAACGTGCAGCCCCGAGACCAAGGAGCCTCACTGTCTTGCA
CAGAATCAGAGCTTGGACAGGGCTTCTGTTCTGACCAGTATGGTGAGTTT
CTGGTCTGTTCTCATGACAAAGGGTGAGCATCCTCACTCCCTAACCTTGG
ACACAGCCAGAGGAGGTCATCTACATCCTGGTGGACTCCCCTGACAGGTT
GTGATCACTGTGAGCAGCCAGACCTGATGCTCTGACCTCCCCATGGCTCT
ATGGCCCCGTGCACTTTCCTCCAGGGACACCCTGCTTTATGTGGTCACTG
AGTTCTCACCCTCTGTAGCGCTCTGTGGTACCACCGTGCTAGCAGCTCAC
CAAGATTCCCCATTCCTTTAAATCCCTGTATTGTCCAAACTACCTGGCAG
TATAAACCCATTCCATGATGGTAGCTCTTGCCAGCTTGACTGGACTGGAA
AAAGACTGATTACTGGTCCCCTTTGGGGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_h21.g1 MSMg01no101_h21.g1 CHROMAT_FILE:
MSMg01no101_h21.g1 PHD_FILE: MSMg01no101_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:43 2005
         (252 letters)



>mm_chr2_178673014_178673665
          Length = 652

 Score =  480 bits (248), Expect = e-140
 Identities = 251/252 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggccaagcccaagtggccaaggccaattctttgacttgacctgcatcttcacagccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctggccaagcccaagtggccaaggccaattctttgacttgacctgcatcttcacagccaa 393

                                                                       
Query: 61  ggtgaattcacagcagagatgactggagaaaagcagccatggtaccaggatccaaccgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggtgaattcacagcagagatgactggagaaaagcagccatggtaccaggatccaaccgga 333

                                                                       
Query: 121 gtgttagctcacctgaagagcctccatgagccatgtggtttccatagcaacacaaccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtgttagctcacctgaagagcctccatgagccatgtggtttccatagcaacacaaccaag 273

                                                                       
Query: 181 tagatctcaacgtgcagccccgagaccaaggagcctcactgtcttgcacagaatcagagc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tagatctcaacgtgcagccccaagaccaaggagcctcactgtcttgcacagaatcagagc 213

                       
Query: 241 ttggacagggct 252
           ||||||||||||
Sbjct: 212 ttggacagggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)