Query= MSMg01no101_p21.b1 MSMg01no101_p21.b1 CHROMAT_FILE:
MSMg01no101_p21.b1 PHD_FILE: MSMg01no101_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:26 2005
(193 letters)
>mm_chr2_55783957_55784549
Length = 593
Score = 209 bits (108), Expect = 9e-59
Identities = 117/120 (97%)
Strand = Plus / Minus
Query: 74 tctcagatccgcacaacctgataggtgttaaggaaagttttgaacatctagagtcaagac 133
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 393 tctcagatccgcacaacctgataggtgttaaggaaagttttgaacatctagagccaagac 334
Query: 134 ttttccctccatcaagtaagactatgatgcttggtttatgaggaatatatatattgggta 193
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 333 ttttccctccatcaagtaaaactatgatgcttggtttatgaggaagatatatattgggta 274
Score = 99.3 bits (51), Expect = 1e-25
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 18 aagcaccgtcagactggggagttcaattatgaaaagaatccaaagggcatatgagatct 76
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 593 aagctccgtcagactggggagttcaattatgaaaagaatccaaagggcaaatgagatct 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space: 108225
Effective search space used: 108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no101_p21.g1 MSMg01no101_p21.g1 CHROMAT_FILE:
MSMg01no101_p21.g1 PHD_FILE: MSMg01no101_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:26 2005
(545 letters)
>mm_chr2_55705737_55706686
Length = 950
Score = 951 bits (492), Expect = 0.0
Identities = 532/550 (96%), Gaps = 10/550 (1%)
Strand = Plus / Plus
Query: 6 aattcactgggctcctgggaggtcccagacattgcagttatttgggtgcatgtcttaact 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcactgggctcctgggaggtcccagacattgcagttatttgggtgcatgtcttaact 260
Query: 66 gctgccctggctgcagcagatctcctttgagacttgtggtgttgaaagagaggggcagaa 125
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gctgccctggctgcagcagatctcctttgagacttgtggtgttgatagagaggggcagaa 320
Query: 126 aaaa-tgatctgccttagcacatttgcagaatggaagggaaattggtgaataataaactt 184
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aaaaatgatctgccttagcacatttgcagaatggaagggaaattggtgcataataaactt 380
Query: 185 atatcttctgtcctctgacttgatctattacaatcctgactaaagttac----atacata 240
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 381 atatcttctgtcctctgacttgatttattacaatcctgactaaagttacgtacatacata 440
Query: 241 catacatacatacatattcaaaagcatgtagatacattcatacaattatagccgaacaca 300
|||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 441 catacatacatacatattgaaaagcaggtagatacattcatacaattatagccaaacaca 500
Query: 301 tttcaatgtattgcattttatttttgttgcaaattcagtaatgtgtgtctgtggagatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcaatgtattgcattttatttttgttgcaaattcagtaatgtgtgtctgtggagatga 560
Query: 361 ataactagattaatgtacttact-----agcatgggaactacaattttcactgccaccac 415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 ataactagattaatgtacttactgcactagcatgggaactacaattttcactgccaccac 620
Query: 416 ccatgtaaagtttgaacagacacgctgaacatgtatattattaaccataggcagagatat 475
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 ccatgtaaagtttgaacagacacgctgaacacctatattattaaccataggcagagatat 680
Query: 476 gggatttacaaaataaaatggctagctagattattcagaatagatgaacttctttttcag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggatttacaaaataaaatggctagctagattattcagaatagatgaacttctttttcag 740
Query: 536 caaaagactc 545
||||||||||
Sbjct: 741 caaaagactc 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 950
Length adjustment: 10
Effective length of query: 535
Effective length of database: 940
Effective search space: 502900
Effective search space used: 502900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
