BAC Information

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BAC

Clone NameMSMg01-102E03
Chromosome2 (Build37)
Map Location 88,578,138 - 88,578,522
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197
Downstream geneOlfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102E03.T7 (MSMg01no102_e03.b1)MSMg01-102E03.TJ (MSMg01no102_e03.g1)
ACCAG317454AG317455
length702701
length of high quality
(start - end)		525 (70 - 594)549 (70 - 618)
definitionCHROMAT_FILE: MSMg01no102_e03.b1 PHD_FILE: MSMg01no102_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:47 2005CHROMAT_FILE: MSMg01no102_e03.g1 PHD_FILE: MSMg01no102_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNCCCCCCATAAAAGTNNNATATCTATXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTTACCTCTGTAGCCCA
TTATTAAATAGTGTTCATTGGTTCTGTGGAGTCTAACTTCTTGAGATATT
TGTATATATTGGCTATTAGCCCTCTATCTGATGTAGTATTATAAACTCCA
ACACAAGGTGGGTAACTACATCTTAGAAAAAGGAAGAAAGTAATCTTCTT
TCAGTAAACCCAAAAGAAGATAGCCACACAAACCTAATTCCTCCACTAAC
AACCAAAATAACAGGAAGCAACAATCACTTTTTCTTAGTGTCCTTTAACA
TCAATGGATTCAATTCCCCACTAAAAAGACATAGACTAACAGACTGGATA
TGTAAACAGTTACAGTTTGTGGTTAGGTTTTGTTTTCTCTTACTAGGAAT
AACTTATTAGTATCTTGGTTCTCTAGAGGAACATAACTTAGTGGTCTCTA
CTGCCAGAAAGGAATGGACTTGCTAGTGAGAGTGCAAACATACAGACAAA
GGTAGTGAGTATATTTCTTCTCCCTTAACCCCTCATATAGGTGGCACAGA
AAGTGCGTTCAAGAATAACGTTAATATTCCCACCTCACCTCAAAGATGTA
AATTGGATGTGGCCTTCCAACTTCAAATGATTGAAATATGGGGTGGGGGA
AA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TTCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATA
TTAGCCCCAAACCTAGGATACCCTAGATATAAGATACAATTTGCTAAACA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_e03.b1 MSMg01no102_e03.b1 CHROMAT_FILE:
MSMg01no102_e03.b1 PHD_FILE: MSMg01no102_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:47 2005
         (525 letters)



>mm_chr2_88577598_88578522
          Length = 925

 Score =  721 bits (373), Expect = 0.0
 Identities = 382/385 (99%)
 Strand = Plus / Minus

                                                                       
Query: 141 gggtaactacatcttagaaaaaggaagaaagtaatcttctttcagtaaacccaaaagaag 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 gggtaactacatcttagaaaaaggaagaaagtaatcttctttcagtaaacccaaaagaag 866

                                                                       
Query: 201 atagccacacaaacctaattcctccactaacaaccaaaataacaggaagcaacaatcact 260
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 865 atagccatacaaacctaattcctccactaacaaccaaaataacaagaagcaacaatcact 806

                                                                       
Query: 261 ttttcttagtgtcctttaacatcaatggattcaattccccactaaaaagacatagactaa 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttttcttagtgtcctttaacatcaatggattcaattccccactaaaaagacatagactaa 746

                                                                       
Query: 321 cagactggatatgtaaacagttacagtttgtggttaggttttgttttctcttactaggaa 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagactggatatgtaaacagttacagtttgtggttaggttttgttttctcttactaggaa 686

                                                                       
Query: 381 taacttattagtatcttggttctctagaggaacataacttagtggtctctactgccagaa 440
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 685 taacttattagtatcttggttctctagaggaacataacttagtggtctgtactgccagaa 626

                                                                       
Query: 441 aggaatggacttgctagtgagagtgcaaacatacagacaaaggtagtgagtatatttctt 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggaatggacttgctagtgagagtgcaaacatacagacaaaggtagtgagtatatttctt 566

                                    
Query: 501 ctcccttaacccctcatataggtgg 525
           |||||||||||||||||||||||||
Sbjct: 565 ctcccttaacccctcatataggtgg 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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