BAC Information

Click to search

BAC

Clone NameMSMg01-102L20
Chromosome2 (Build37)
Map Location 40,299,167 - 40,299,411
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps2_560.1, LOC100042604, Magmas-ps
Downstream geneLOC666531, Lrp1b, LOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102L20.T7 (MSMg01no102_l20.b1)MSMg01-102L20.TJ (MSMg01no102_l20.g1)
ACCAG317802AG317803
length775722
length of high quality
(start - end)
244 (132 - 375)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no102_l20.b1 PHD_FILE: MSMg01no102_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:25 2005CHROMAT_FILE: MSMg01no102_l20.g1 PHD_FILE: MSMg01no102_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNCCCCCCCCTTCTGCTGNGCTCCCCTTATA
CTTNNNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGA
GGATCCGCGGAATTCATTGTTTTCCTGAGATTCTATTTAAAATTGCTGCT
GAGAATGAGCTGTAGTTTCCTACTTTTTAATACATCAAATCATTTTTCAG
TGTTATACTCTTTCATCAATGAGCTTGAAAAGTGAGCATGAAAATTTCTG
TTTACTTTTGTCATGCAATTTATGATATTAGCTGTGAGCCCAAGATACAA
TAATTATACAACTACTGAACTATGGTGCCTGAAGGGTCACTACTTTTTCC
AAATTCTCTTATTAAAACTAATGGTTTTTATTAAAAATATGTTTGGGAGT
ATGTTGTTCTTTCCATGTTCTAATTCCCCCACCCTGACATTTGGAGAAAT
ACCTTAAGAACAAAATCCACATCTACTATAAAATAAATCCTGAATGACAT
TTTCAGAGAACAGAATACTTTTGAAAAATTTTGCTCATTTGACTACTATT
TCAACAGTATTTCTTTCAAAAGAGCCACTATTTGTCTTTCTAATAAGCTG
AAAATGTCAGGAAAAAAAATGCCATTTTAAGCAATTGCCTAAAGTAAAAA
TGATGTGATCTTACTGTGAACTCTACATTGTTATATAACTTCTCTTCTCT
CAGAACTGAATTTAACTATCCCCTCGACTGTATATTTTCACCCCCACCTT
ACTTATCTATTTGCGTAAAACTTTT
TCGATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGGGAGAGGCCTTAAAAGAATGCCC
TACAGTGGGGAGAGCAAACTAGTAGAGTCTACCTTCAGTAGAAAGGATGG
AGCATTAAGTGGAGGAACGGGGTTGCCATCCCACAGTCAAAACCTCCTAC
CCAGAATTGTTCCTGTCTAAAAAATCTGCAGGGACAACAATAGAGAAGAG
CCTTAGGAAAAGGAGGTTCAGTGACAGGGCCATTTTGGGATTCATCTCAA
GGGGAGGCTCCAAGGCCTGACATTATTACTGATGCTATGGTGTGCTTGAG
TCTAGGATGGCTGTCATATGACACACCTCCCAAGCAGCTAAAAGAGTCAG
ATGCAGATACTTACACCCAACCAATGGACAAAAGCCCGGGACCCCTGGAG
TTGAATTATGGATAAACTAGAAGCTGAGGAGGAGGGTAACCCCATAGGGA
GATCTGCAGTCTCAACTAACACAGACACTGGAGATCTATCAGACTCTGAG
CCACCAACCAAGCAACATAGATGAGCTGGTCTGAGGTCTCCAACACATAC
ACAACAGAGAACTGCCTAGACTGGCCTCATGGGGAGAAGCACCTAACCCT
TGAGATACTTGAGGTTCCGGGAAGTACGGAGTTCTGCTAGGTCGCTGTGT
GTGAAGCGGAGATATCCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_l20.b1 MSMg01no102_l20.b1 CHROMAT_FILE:
MSMg01no102_l20.b1 PHD_FILE: MSMg01no102_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:25 2005
         (244 letters)



>mm_chr2_40298967_40299611
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatttaaaattgctgctgagaatgagctgtagtttcctacttttt-aatacatcaaat 59
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tctatttaaaattgctgctgagaatgagctgtagtttcctactttttaaatacatcaaat 260

                                                                       
Query: 60  catttttcagtgttatactctttcatcaatgagcttgaaaagtgagcatgaaaatttctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttttcagtgttatactctttcatcaatgagcttgaaaagtgagcatgaaaatttctg 320

                                                                       
Query: 120 tttacttttgtcatgcaatttatgatattagctgtgagcccaagatacaataattataca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttacttttgtcatgcaatttatgatattagctgtgagcccaagatacaataattataca 380

                                                                       
Query: 180 actactgaactatggtgcctgaagggtcactactttttccaaattctcttattaaaacta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actactgaactatggtgcctgaagggtcactactttttccaaattctcttattaaaacta 440

                
Query: 240 atggt 244
           |||||
Sbjct: 441 atggt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)