BAC Information

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BAC

Clone NameMSMg01-102P11
Chromosome2 (Build37)
Map Location 53,578,446 - 53,578,732
singlet/doubletsinglet
Overlap genenone
Upstream geneStam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933
Downstream geneRprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102P11.T7 (MSMg01no102_p11.b1)MSMg01-102P11.TJ (MSMg01no102_p11.g1)
ACCAG317969AG317970
length698717
length of high quality
(start - end)
293 (64 - 356)70 (56 - 125)
definitionCHROMAT_FILE: MSMg01no102_p11.b1 PHD_FILE: MSMg01no102_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:43 2005CHROMAT_FILE: MSMg01no102_p11.g1 PHD_FILE: MSMg01no102_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATGCGCGGAATTCAGA
TGATTTCCGATACAGGTTTTTTTTCTAATTTATACCCAATGGGATTATGG
AAATTAAAATGAATTCGTAAACAGCTATGCCACTTCAATGACTTATAACT
TGATAACTATATTCTGAGGAAAATTTACATATTCAAATCATATGATATTT
CCTTAACTTGTTCTCTCTATCTCCTCAGTTGCTTAATCTAAGGTTGTTTC
AAAAAGCTATGTAAAACCTGGTCAGCATGTCATGTGAAATGGTGAAATAA
TGGATGTTTTTACTGTTCACTTTATGTCAGACTTAATAGAAGACCATGAA
AGACCAAAGTAACAACTTGCTGAATCAGTGTCTTTTATAAGGGCTAAGTG
ATACGAGTATAAGTGCAGGGTTATTTACAAAGAGCAGAGATAACTAACAC
AAATGCAGCTGTATCACTAAAAATCACACTCTGTCCATGTTAACTGTTTT
TACCAAAATAAAAGGATATATATTTTTAGTCATTGTCCTATTCAGACTGA
CCCCAGACATTTCCCTTCCCAGATTTCACGAATAGATGCTAATCGTAGAC
TGTGAGCAGAGACAAAAAATGCTCTTTACATCAAAAACAAGTCCTTGCAT
GACATCTACAATACGTTTGCCTACCTACCACGGTACTATAGCATTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTATTTTGTATTATGACTGGCTGATAACAGTATAATCATTAAGA
ATTGTGGGAATGCCAGGGCCTATAAGTGGGAGTGGGTGGGTAGGGGAGCA
GGGCGGGTGGAAGGTATAGGGGACTTCTGTTATTGTCTTCTGTCTCGTAT
TGTTTTTTTTTTCTTTTTCTTTTTTTTATTCTTTTTTCTTTTTTTTTTCC
TTTTTTTTGTTCTCATGTCTTCTTCCTCTTTTTTCCTCTTTCCCTTTTTT
TTTTCCCTTTTTCCTTCTCCCTTGCTCCCACGTCTCCTTTTTCTTTCCTC
CCCTTTTTTCCTTCTTCTTTCCTTCTTTTCCCCCCCCCTTCCCCCTCCTT
CCCATTCCACACCCTTCTTCTCCTTCCCCTCCTTTTTTCCTTCCCCCCTC
TTTCTTCCTTTTTTTCTTCTCTCTCCTCCCCCCCCCCCCTCCCCTCCTTT
TTCTCCTCCTACCTCCTCTTTCCCTTTTCTCTTCCTTTCCTTTCTTTTCT
CTTCACCTCTCTTCTTCTTTTTATTCTCTTTACTTTACCTCCTCTTTTTC
CTCCATCCTTCTTTCCCTTTCTCTTCCTTTCTTCTCTCTTTTTTTATATT
CTTTTCTCTTCTTTTTTTTTTCCCCCTCTTCTTCTATTTTCCTCTTCTCT
CTCTCCCTCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_p11.b1 MSMg01no102_p11.b1 CHROMAT_FILE:
MSMg01no102_p11.b1 PHD_FILE: MSMg01no102_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:43 2005
         (293 letters)



>mm_chr2_53578244_53578932
          Length = 689

 Score =  484 bits (250), Expect = e-141
 Identities = 280/292 (95%), Gaps = 6/292 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   gtttt-ttttctaatttatacccaatgggattatggaaattaaaatgaattcgtaaacag 61
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 gttttgttttctaatttatacccaatgggattatggaaattaaaatgaatt-gtaaacag 261

                                                                       
Query: 62  ctatgccacttcaatgacttataacttgataactatattctgaggaaaatttacatattc 121
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 ctatgccacttcaatgacttataacttgataactatatcctgaggaaaatttacatattc 321

                                                                       
Query: 122 aaatcatatgatatttccttaacttgttctctctatctcctcagttgcttaatctaaggt 181
           ||| ||||||||| ||||||||||||||||    ||||||||||||||||||||||||||
Sbjct: 322 aaaccatatgatacttccttaacttgttct----atctcctcagttgcttaatctaaggt 377

                                                                       
Query: 182 tgtttcaaaaagctatgtaaaacctggtcagcatgtcatgtgaaatggtgaaataatgga 241
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 378 tgtttcaaaaagctatgtaaaaccaggtcagcatgtcatgtgaaatggtgaaataatgga 437

                                                               
Query: 242 tgtttttactgttcactttatgtcagacttaatagaagaccatgaaagacca 293
           |||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtttttactgaacactttatgtcagacttaatagaagaccatgaaagacca 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 689
Length adjustment: 9
Effective length of query: 284
Effective length of database: 680
Effective search space:   193120
Effective search space used:   193120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)