Query= MSMg01no103_d11.b1 MSMg01no103_d11.b1 CHROMAT_FILE:
MSMg01no103_d11.b1 PHD_FILE: MSMg01no103_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:04 2005
(603 letters)
>mm_chr2_89780752_89781754
Length = 1003
Score = 1087 bits (562), Expect = 0.0
Identities = 593/606 (97%), Gaps = 9/606 (1%)
Strand = Plus / Minus
Query: 5 gaattcag-ttttcaatatgaatatcctatgtttttccttatttttttcatacaatatat 63
|||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 884 gaattcagtttttaaatatgaatatcctatgtttttccttaattttttcatacaatatat 825
Query: 64 tttaatcatcttctttcccttcctcaactccttccagattattcccatttccttccttat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tttaatcatcttctttcccttcctcaactccttccagattattcccatttccttccttat 765
Query: 124 ccaaccatatgttctttctctctctcag-----aaaacaaaacaaaacaaaacaaaaaac 178
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 764 ccaaccatatgttctttctctctctcagaaaacaaaacaaaacaaaacaaaacaaaaaac 705
Query: 179 tccaaacaaataagcaaacaaaagaataaggcaaagcaaagcaaaccaaagcaaaagtta 238
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 704 tccaaacaaataagcaaacaaaagaataaggcaaagcaaaccaaaccaaagcaaaagtta 645
Query: 239 taggaagtatattaaaacaaacaaaataaaacat-gtagtatgtgtggaacatggttgat 297
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 644 taggaagtatattaaaacaaacaaaataaaacatag-agtatgtgtggaacatggttgat 586
Query: 298 atactcagtgacactctattggaacaaacttgttttctctttcccagcaggtattaaatg 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 atgctcagtgacactctattggaacaaacttgttttctctttcccagcaggtattaaatg 526
Query: 358 caaataacttcttagttaggagtagtaacttctgttcactaccccttctcaatgctgagg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 caaataacttcttagttaggagtagtaacttctgttcactaccccttctcaatgctgagg 466
Query: 418 tatttctatgctttaaacctatatggagtgcaaaaaataaattcaaaacaaaataaaaat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tatttctatgctttaaacctatatggagtgcaaaaaataaattcaaaacaaaataaaaat 406
Query: 478 tttaaaaggaattaaaaaaaactgtgcaggtcttgtgccttcctcttatgattcttcatg 537
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 405 tttaaaaggaattaaaaaaaactgtgcaggtcttgtg-cttcctcttatgattcttcatg 347
Query: 538 gatgtacctggatggtccatcagttaggcaataatgagatccacacactcctttcttcct 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gatgtacctggatggtccatcagttaggcaataatgagatccacacactcctttcttcct 287
Query: 598 ttatgt 603
||||||
Sbjct: 286 ttatgt 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_d11.g1 MSMg01no103_d11.g1 CHROMAT_FILE:
MSMg01no103_d11.g1 PHD_FILE: MSMg01no103_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:04 2005
(247 letters)
>mm_chr2_89718415_89719061
Length = 647
Score = 441 bits (228), Expect = e-128
Identities = 240/244 (98%)
Strand = Plus / Plus
Query: 1 gagtaaaatggtttgtctaaattcatttcttccattctttctgcctcatgccctgcaaaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 gagtaaaatggtttgtctaaattcatttcttccattctttctgccttatgccctgcaaaa 260
Query: 61 gcaatagttttgcatggaatttcatttctccatataaatctattaaaaattcaaatctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaatagttttgcatggaatttcatttctccatataaatctattaaaaattcaaatctca 320
Query: 121 agttttctgcaacattgctttgaggcttaattctagaagataagatttgtgtttacagat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttttctgcaacattgctttgaggcttaattctagaagataagatttgtgtttacagac 380
Query: 181 tttacttttgatttcatatgaaattatttaactgattctttttctaagtgagacatatgt 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaacttttgatttcatatgaaattatttaactgattctttttctaagtgagacatatgt 440
Query: 241 ttca 244
||||
Sbjct: 441 ttca 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
