Query= MSMg01no103_o03.b1 MSMg01no103_o03.b1 CHROMAT_FILE:
MSMg01no103_o03.b1 PHD_FILE: MSMg01no103_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:56 2005
(618 letters)
>mm_chr2_20609645_20610662
Length = 1018
Score = 1091 bits (564), Expect = 0.0
Identities = 603/616 (97%)
Strand = Plus / Minus
Query: 3 ggaattcaatatgtttacccggctggcctcacacttaagagattcacctgcctctgcctc 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 ggaattcaatatgtagacaaggctggcctcacacttaagagattcacctgcctctgcctc 858
Query: 63 cagagtgctgggatttacgatttgcactgctatgcctggtggggaagaattgtcattagc 122
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 cagagtgctgggatttatgatttgcactgctatgcctggtggggaagaattgtcattagc 798
Query: 123 tcctctggatggcctttcagtgttcctagctttctttattttgccttacccttaacttca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tcctctggatggcctttcagtgttcctagctttctttattttgccttacccttaacttca 738
Query: 183 gtacatgatttgtccaaagccatactcctttcaattttccagaaacgccttgaccatttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gtacatgatttgtccaaagccatactcctttcaattttccagaaacgccttgaccatttt 678
Query: 243 attttctcaccacgcctttgttcatttgacaccctcctccaggaagcactcttctacgtg 302
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 677 attctctcaccatgcctttgttcatttgacaccctcctccaggaagcactcttctaagtg 618
Query: 303 aagaatctggttttcattgtttcatggttccttggccatcccttctgtctctccttccag 362
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aagagtctggttttcattgtttcatggttccttggccatcccttctgtctctccttccag 558
Query: 363 ccctgaatgcatacatctgagaaccagcatcatccagatccatggatggttcagcacact 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccctgaatgcatacatctgagaaccagcatcatccagatccatggatggttcagcacact 498
Query: 423 caatcccaccccatctcctcagaatgttaccttttccccaggatcttgacaatctgccca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 caatcccaccccatctcctcagaatgttaccttttccccaggatcttgacaatctgccca 438
Query: 483 tcatatcattcttcttcatatgccattttccctaggcacacatagaatccttggcttcct 542
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 437 tcatatcattcttcttcatatgccattttccctaggcacacacagaatccttggcttcct 378
Query: 543 ttccctgatccctgcaacggttgccatctcatgccattgctatgagaagatgcttgaaca 602
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtcccttatccctgcaatggttgccatctcatgccattgctatgagaagatgcttgaaca 318
Query: 603 aagcagctttgtgaaa 618
||||||||||||||||
Sbjct: 317 aagcagctttgtgaaa 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_o03.g1 MSMg01no103_o03.g1 CHROMAT_FILE:
MSMg01no103_o03.g1 PHD_FILE: MSMg01no103_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:56 2005
(475 letters)
>mm_chr2_20501902_20502776
Length = 875
Score = 820 bits (424), Expect = 0.0
Identities = 465/482 (96%), Gaps = 7/482 (1%)
Strand = Plus / Plus
Query: 1 actatgagcttgatgacttaagagaaagctatttaatcccactgacctttgtctgcgaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 194 actatgagcttgatgacttaagagaaagctatttaatcccactgacctttgtcttcgaaa 253
Query: 61 ggtccaaaaatagcacccagcttgcagtgtggtgtggatgtgagaggatctgttcagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggtccaaaaatagcacccagcttgcagtgtggtgtggatgtgagaggatctgttcagagc 313
Query: 121 atctgccaggttgcagactcatagtagacatagaataagtgaagctctcatagattttct 180
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 314 atctgccaggttgcagactcacggtagacataggataagtgaagctctcatagattttct 373
Query: 181 gtcattcctccactcagttgacacgtgaggactctgatctagatgctgttaggtaatggg 240
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 374 gtcattcctccactcagttgacatgtgaggactctgatctaggtgctgttaggtaatggg 433
Query: 241 gaaggaaggttgaaaggagcaagagaagcctacgatttagtggagactgcaaataaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaaggaaggttgaaaggagcaagagaagcctacgatttagtggagactgcaaataaacag 493
Query: 301 gttgttcagagaaagaagacatttcgtaataaagcaagaagctagcgacacatgaacag- 359
||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||
Sbjct: 494 gttgttcagagaaagaagacattccgttataaagcaagaagctagtgacacatgaacagt 553
Query: 360 ---c---cagacgtgtcccctaagccacactgtggagtcagggaacttccagagaaaaga 413
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaacagtcagacgtgtcccctaagccacactgtggagtcagggaacttccagagaaaaga 613
Query: 414 catctttacatggaagattgtttttacagacaagttctataggtgaggcatattgacatc 473
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 614 catctttacatggaagattgtttttacagacaagttcaataggtgaggcatattgacatc 673
Query: 474 ca 475
||
Sbjct: 674 ca 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
