BAC Information

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BAC

Clone NameMSMg01-103P12
Chromosome2 (Build37)
Map Location 89,593,816 - 89,594,276
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1
Downstream geneOlfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103P12.T7 (MSMg01no103_p12.b1)MSMg01-103P12.TJ (MSMg01no103_p12.g1)
ACCAG318703AG318704
length729710
length of high quality
(start - end)
192 (86 - 277)490 (73 - 562)
definitionCHROMAT_FILE: MSMg01no103_p12.b1 PHD_FILE: MSMg01no103_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:03 2005CHROMAT_FILE: MSMg01no103_p12.g1 PHD_FILE: MSMg01no103_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATCACTCNTTCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
AGAGAATCCGCGGAATTCCATGATCGTTTCTCCACTGTCGTACTTCTCTG
GCTGTGAAATGAGTTCCTTGGTCAGAAGCAATACTGTGTGGAATACCATG
ACTCATAGATAAGGCATTCTGTCAATCCCTGAATGGTGGTTTTAGCAGAG
GCATTACGTGCAGGAAAGGCAAATCCATAACCAGAATAAGTATCTACTCC
AGTAAGAACAAAACGCTGTCCTTTAGCTTAGATAGAAGTATGTAGGTGGA
GATCCTGAGATGGGCATTTTTAAAAATTTATTTTCTTCATTTACCATTCA
AGTGCTATCCCAAAAGTCCCCTGATATGATCATTTTACCGACCATGAACT
CTAAGGAGAATGAGTTGAATGATGTTGACTATACCACGGTAAATGGATGT
GGTCTCAACTGTTATTGTCTCTAGCCTCGAGTTTGGAGATCTTTTGGTGT
GCGCTACAGATCTGCTATCCCTTGGAGAGAAGGAAACAACTATTCTCACG
CTTGTCTAACGCATTTGCATCCTCACAAATAGCAAATTTCCCTACCTTTG
ATCTTATGAATTGTAAAGACATGAATTGGAATATGCTCTGTCCATTATTC
TCCCTTGGAACATACCTGTGTTCTACGCCTGCGTGCTATGACTTATCCTG
CCTGAATCCTAATCAATCTTTTTCACCAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGAAATGACTATGCAGAGAGACAGAG
GGAAAAACAGATAGAGATTTAATAGTAAGAATATATTTTTAATCTTAAGA
TTAAATAAGATTTAATTTAGTCTTAATTATTTTTAGCATTTAGGATAAAG
ATGCTGAGAGTCCCCACATAGGAATTCATTGTCCAGAACACCAAAAGCAG
AACACTCAAAGAAAACACAAAACCAGTGCACAAAGACATGGGCTGGGTTC
ATTCTCTAAACCTAATTAGAAATATATATCTCTTTGTGTGTCCTAAAACA
CTGGGATTAGACCGTACTTCAGAATCTTTCCCAGTCTCACAATTTCTAAT
GGTCTATATGTTGTTACTTATGAGCGCAGCCCTATCTCTTATGCTGTAAT
ATTCTTTTACACATTTATACAATGTTACTAAATTTATCATGGCTTCCTGA
ATGATATCAATAATGTAAAATGGATTTTGATAACTACTGTGACCAAAAAT
TATGCTAATTATATTGTATACAGTATAGCAAGAAAGAATCTGAGAAATAC
TTGAATAAAAAAGGAGTAGTGAAAAAGCTGTGGACATGAACTCACACACC
TGGTTACAGCATTAGGTGCCTTCAGATAGCACTATCCTGATTTTGACCAT
CATACTATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_p12.g1 MSMg01no103_p12.g1 CHROMAT_FILE:
MSMg01no103_p12.g1 PHD_FILE: MSMg01no103_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:03 2005
         (490 letters)



>mm_chr2_89593603_89594492
          Length = 890

 Score =  847 bits (438), Expect = 0.0
 Identities = 459/474 (96%), Gaps = 13/474 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagaaatgactatgcagagagacagagggaaaaacagatagagatttaatagtaagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tcagaaatgactatgcagagagacagagggaaaaacagatagagatttaatagtaagaat 273

                                                                       
Query: 61  atatttttaatcttaagattaaataagatttaatttagtcttaattatttttagcattta 120
           ||||||||||||||||||||||||||||||||||||             |||||||||||
Sbjct: 274 atatttttaatcttaagattaaataagatttaattt-------------tttagcattta 320

                                                                       
Query: 121 ggataaagatgctgagagtccccacataggaattcattgtccagaacaccaaaagcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggataaagatgctgagagtccccacataggaattcattgtccagaacaccaaaagcagaa 380

                                                                       
Query: 181 cactcaaagaaaacacaaaaccagtgcacaaagacatgggctgggttcattctctaaacc 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 cactcaaagaaaacacaaaaccagtgcagaaagacatgggctgggttcattctctaaacc 440

                                                                       
Query: 241 taattagaaatatatatctctttgtgtgtcctaaaacactgggattagaccgtacttcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taattagaaatatatatctctttgtgtgtcctaaaacactgggattagaccgtacttcag 500

                                                                       
Query: 301 aatctttcccagtctcacaatttctaatggtctatatgttgttacttatgagcgcagccc 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aatctttcccagtctcacaatttctaatggtctatatgctgttacttatgagcgcagccc 560

                                                                       
Query: 361 tatctcttatgctgtaatattcttttacacatttatacaatgttactaaatttatcatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatctcttatgctgtaatattcttttacacatttatacaatgttactaaatttatcatgg 620

                                                                 
Query: 421 cttcctgaatgatatcaataatgtaaaatggattttgataactactgtgaccaa 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcctgaatgatatcaataatgtaaaatggattttgataactactgtgaccaa 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)