BAC Information

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BAC

Clone NameMSMg01-104F20
Chromosome2 (Build37)
Map Location 20,327,360 - 20,327,606
singlet/doubletsinglet
Overlap geneEtl4
Upstream geneLOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104F20.T7 (MSMg01no104_f20.b1)MSMg01-104F20.TJ (MSMg01no104_f20.g1)
ACCAG318995AG318996
length682694
length of high quality
(start - end)
---268 (76 - 343)
definitionCHROMAT_FILE: MSMg01no104_f20.b1 PHD_FILE: MSMg01no104_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:36 2005CHROMAT_FILE: MSMg01no104_f20.g1 PHD_FILE: MSMg01no104_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTCATAATTTGGGCCGCAAANGAGTCNNATCCTTACCGNNNGNGGAAN
NNNGTTTACCNGACCCGAACGGGAGGGGGANNNNNGAAGGGNNNNNANAN
AAATTTTTCACAAAAGAAGGGGGGGNNNGGNNAGNNNGGNNGGAANCNGA
GNACNGAGAGGAAAGCGAANNAGGNNGAAAAGNNAGANACAGNAGGAAAG
GNGAAANAAACNAGAGAAACCGGGGAGGAAGAAAGTTTTTTTAAGGAAAA
ANNAANAGAAGAGGGGGNNCAGGNAGGNNAAGAANNAGAGAACGAGCAGT
TTCCGTCCCTTGACAGCNAGCAACACAGGCACGGCAGNAGGATTTTTACC
CCCCCCCCCCACGCAGGNNAAAGAAAGGAAAAAGAAAGAACCCCCGANCA
CAAGCAGGCAGAAACAACGCAGAAACCACCGCGAACACCCGCACCAAGCA
GCAAAGAACACAAGAAAAACCCGCACGAAACCGCACCCCAACAAAGCGGC
AGCCCAGGCCACCCCCAGCAAAGGAAGCACCCGGAGCGGAACACAAGCCA
CAGACCCGGCCGAGACGAGCACAAACAAACGAAACAACGCAGCGACAAGA
CAAACGAAGACCCAAAAACCCCCCCCAGGGACCTTTTTTTTTTTTTTTAA
CCACCGGCCCACGTCCCGCCTTGCCTCGAGGA
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATAAACCAAAGTAACTAGTCATAC
CAGCTGAAGCAGTGACCTCCAAATGCAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGATCTGTCTCAATGTATAA
GGAATGTATAATGAGTGATAGGAAGATGTTAGACATTAACCTCAGGCCTA
TTCCCAACAAACAGGCAGACACATGTATCTACACACATGTGAACATCTAC
ACACACACACACACACACACATTCACACACACACACACACACACACCCTG
ACACATGCAAAAGCAATTGCTTAGAAGAATGTGCTATACCATACTTTCAC
AAACGATGATTCTAGACTTCATGAGGCTCACTGCCTACATTTATAAAGTT
TTATTAGAAGACATATATGCCTATTGCTTTTGTATTATGCTTAGCTGATT
TTTAAAAAGTATTTATTTATTTTATAAGTGTTGTGTCTTGACACACACTC
ATACATCAGAAGAGGGTGATTCCCATTACAGATGGTCGTGAGTCACCATG
TGTTTAATGGGAATTGAATGCAGTACCCCTATAAGAACAGTCCGTGCTCT
TAACCTCTGAGGCATCTCTCCATTCCTTTGTTAGCTTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_f20.g1 MSMg01no104_f20.g1 CHROMAT_FILE:
MSMg01no104_f20.g1 PHD_FILE: MSMg01no104_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:36 2005
         (268 letters)



>mm_chr2_20327095_20327762
          Length = 668

 Score =  408 bits (211), Expect = e-118
 Identities = 245/267 (91%), Gaps = 20/267 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaaccaaagtaactagtcataccagctgaagcagtgacctccaaatgcagagagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aataaaccaaagtaactagtcataccagctgaagcagtgacctccaaatgcagagagaga 453

                                                                       
Query: 61  gagagagagagagagagagagaaagagagagagagagagagagagagatctgtctcaatg 120
           |||||   | |||||||||||||              |||||||||||||||||||||||
Sbjct: 452 gagag---g-gagagagagagaa--------------agagagagagatctgtctcaatg 411

                                                                       
Query: 121 tataaggaatgtataatgagtgataggaagatgttagacattaacctcaggcctattccc 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tataaggaatgtataatgactgataggaagatgttagacattaacctcaggcctattccc 351

                                                                       
Query: 181 aacaaacaggcagacacatgtatctacacacatgtgaacatctacacacacacacacaca 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 350 aacaaacaggcagacacatgtatctacacacatgtgaacatccacacacacacacacaca 291

                                      
Query: 241 cacacattcacacacacacacacacac 267
           ||||||  |||||||||||||||||||
Sbjct: 290 cacaca--cacacacacacacacacac 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)