BAC Information

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BAC

Clone NameMSMg01-104G19
Chromosome2 (Build37)
Map Location 87,785,274 - 87,785,660
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155
Downstream geneOlfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104G19.T7 (MSMg01no104_g19.b1)MSMg01-104G19.TJ (MSMg01no104_g19.g1)
ACCAG319041AG319042
length705724
length of high quality
(start - end)		367 (42 - 408)567 (67 - 633)
definitionCHROMAT_FILE: MSMg01no104_g19.b1 PHD_FILE: MSMg01no104_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:41 2005CHROMAT_FILE: MSMg01no104_g19.g1 PHD_FILE: MSMg01no104_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAGATCCGCGGAAT
TCTTTTCGAATTGACAAACAGGACAGAAGATTTCACTGATGTCCTGTGCT
ACACAACTGTGCTTCTTCCTTGCTTTTGGAACTACTGAATGTTTGCTGCT
GGCTGTGATGTCCTATGACCGCTATGTGGCCATATGTAACCCTCTGCACT
ATCCTCTGGTCATGAACCCAACAAAGTGCACACAGCTGGCAGCAGGCTCC
TGGCTTGGAGGCATCCCAGTCCAGATAGGACAAACTTGTCAGATATTCTC
CATGCATTTTTGTACTTCTAATCAAATAGAGCACTTCTTTTGTGATATAC
CAATAATTCTCAAGCTGGCTTGTGAGAACACTTAAGTGCATGAACTGTCT
GTCTATGCGTAAGGTGTAGTGTCTGCATTCCCCTTTATACTGGCGCTTAC
ATCCTACAGCAAAATCATTGCCACGATCCTGACGTTGCCAACATCCCAAG
GTCGGTGGAACAGCCTTCTCCACATGCTCTTCTCACCTGCTGGTGGTACT
GTTGTTTTATGGATCTGCTGTCGTTACGTACTTGAATACACCGCCCATGC
CCTTCTCCCTAACCTGACAACTTACATCTCTGTTCCACACTACTATTACT
CCCAATTTCTCTCCCCTTAATATTCAGCCTTAACACACAGCATGTGATTG
CTGAT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTGTACTGGGACATATGATCTTTGTAATACCA
AGGGCCTCTCCTCCCATTGATGACCAACTAGGCCATCCTCTGCTACATAT
GCAGACACAGCTCTGGTGGGTACTGGTTAGTTCATATCATTGTTCCTCCT
ATAGGGTTTCAAACCTCTTTAGCTCCTTGGGTACTTTCTCTACCTCCTTC
ATTAGGGGCCCTGTGTTCCATCCAATAGATGACTGTGAGCATCCACTTCG
GTATTTGCCAGGCATTGGCATAGACTCACAAGAGAGTGGGGGACTTACTT
AAGGGAATACTATGAGGAGAAAAAAGGCAGATATTAGGTTTTAAAGTGAA
CAAATAAATAAATTCAATAAATAAATAAGTAAATAAATAATATAAAATAG
AGTTGCAGATGATATTAACAAAGCTAAAACTCAGAGGAAATACTTCCAAA
CATGTTGTAGCTTTCCTTCAAGTTTTCCGTGAAATTAAAATTACATCATA
AATAGTATTTAATGTTAATTGCTTGTTCTATAGTCCCTAGAGAATAACAC
AGCCAATTATTTCTAGACTATAATGCTGGGGGAAGAGGCAGTAAACATAA
TAATGGAGTTAGCAACTGCTTCTAATAAGTTCTTTCTATAGAGGCAAGAG
GAGACTGCACTTACTACCAACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_g19.g1 MSMg01no104_g19.g1 CHROMAT_FILE:
MSMg01no104_g19.g1 PHD_FILE: MSMg01no104_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:41 2005
         (567 letters)



>mm_chr2_87784694_87785660
          Length = 967

 Score =  717 bits (371), Expect = 0.0
 Identities = 383/387 (98%)
 Strand = Plus / Minus

                                                                       
Query: 181 cttcattaggggccctgtgttccatccaatagatgactgtgagcatccacttcggtattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 cttcattaggggccctgtgttccatccaatagatgactgtgagcatccacttcggtattt 908

                                                                       
Query: 241 gccaggcattggcatagactcacaagagagtgggggacttacttaagggaatactatgag 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 907 gccaggcattggcatagactcacaaaagagtgggggacttacttaagggaatactatgag 848

                                                                       
Query: 301 gagaaaaaaggcagatattaggttttaaagtgaacaaataaataaattcaataaataaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gagaaaaaaggcagatattaggttttaaagtgaacaaataaataaattcaataaataaat 788

                                                                       
Query: 361 aagtaaataaataatataaaatagagttgcagatgatattaacaaagctaaaactcagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aagtaaataaataatataaaatagagttgcagatgatattaacaaagctaaaactcagag 728

                                                                       
Query: 421 gaaatacttccaaacatgttgtagctttccttcaagttttccgtgaaattaaaattacat 480
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaaatacttccaaagatgctgtagctttccttcaagttttccgtgaaattaaaattacat 668

                                                                       
Query: 481 cataaatagtatttaatgttaattgcttgttctatagtccctagagaataacacagccaa 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 667 cataaatagtatttaatgttaattgcttgttctatagtccctatagaataacacagccaa 608

                                      
Query: 541 ttatttctagactataatgctggggga 567
           |||||||||||||||||||||||||||
Sbjct: 607 ttatttctagactataatgctggggga 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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