BAC Information

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BAC

Clone NameMSMg01-104G22
Chromosome2 (Build37)
Map Location 180,978,527 - 180,978,875
singlet/doubletsinglet
Overlap genenone
Upstream geneRps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779
Downstream geneGmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104G22.T7 (MSMg01no104_g22.b1)MSMg01-104G22.TJ (MSMg01no104_g22.g1)
ACCAG319047AG319048
length730722
length of high quality
(start - end)
349 (72 - 420)85 (118 - 202)
definitionCHROMAT_FILE: MSMg01no104_g22.b1 PHD_FILE: MSMg01no104_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:41 2005CHROMAT_FILE: MSMg01no104_g22.g1 PHD_FILE: MSMg01no104_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATT
CCACCCTCCTTCCCATTGTGAGTGACCCAAACCACAAGGAGGAAGCAATC
TTTTCTGATACGTGGTCATTTCTGCTGAGTACTCAATGTCTGTCTGTCCT
CTGTAGCCTGTAAGACTAGAACCCCGGCGCCACAGTGCCCTAGCTCAGTG
GGCTACTCAGCCTTTAGGATGACCAAACTGTACTTTCCCACTGAGCTCAG
GCAACTCCAATGAGAACGCACAATGCCCCCAGCGCTTCCTGCTCTGTGAT
GAGCTCTGGTAAGCTCCCAACATCTCTGTGAATCTGAAGGGGTTGGCTTG
CCAAGGACCAGCCTCGGCTTAGAGAGCGGTTCTGAGAGAAGTGGTGACTG
GAAGGGGTGAAAACTAACAACTCAGAAGTCAAATCTGGGTCTAAGCTACT
GAGATGGCATTCCAGACTGCGCTACCTCCGTCCCCTTCCCCCTCCCCACT
CCCCTTATCTCCTCCCTTTTTATCTCGGATACCTTGTTATTACTGTGCTC
TTCTCTCATGGTTTTTAAGCCCGCTCATTGTTCTACTTCTCTCCGTTCCC
GTTGTCCTTTGTTTTTTTCCCACCTTTCCGCTATTATAACCTTTTTTTAT
TCCCTGTTCTCCCCTCGTTCTCTATTCCCCCCTCACCTGTGCCTATTTCT
CTTTTTTTTTCGCTTTTCTCTTTCCTTTTC
TGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGCGAATTCTGTGGGTCTCATGGAAACTCCAGCCCACAGGTT
GGAGGCTCTGGGGGACATTTTCTTTCTGAGTGTGGTGCTGGCTGGAAAAG
ATGGGCCGAAGAGAGAAGCATGACAGGAGAGGACACGGGTCTTCTACCTG
ACAGGACACTGGGAGCCCCGGGAGAGGCAGGATATTGGATGCTACTTCCA
CAGTTACCTGTGCCTCTGGGGTCTGGGAAGATGTCCAAGGGCCTACCCAG
GAAGCCTTCTATTTTGAGAGTCAAGTGCTTAATCTCCTAGTCCAGTCTCT
ATTAAAGGTATGAGACTGGTCTCAGCTCTAGAGTTTAGGACCCATACCTG
CTATTGGACCAGGTCAGGAATGACTGATCTATTTTGTAAGGCTATGCTGG
TCTGGATGTCCTCCTCTAGATTATCCCCCCCTCTCGCAGGGTAAGGAGGC
GGTTCCCCTTCTAATTGTGGTCGGTGAATTCCTGAATATTTCATCCACCT
TGCCCTGTATTCCACCTTGTTTTCTGTCTCCCATTCTGTCCCTTTCGTTC
TCCCATGGTACCCTTTATTCCGCCTCCTGTAACGGTTCTGCTCCCTGGAC
CTGTTTGCTTCTTCCCCGTTTGATGTTCCGTTACTCTCGGCTTTTCGCAC
GTTTTCCCCTAGCTGTTAACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_g22.b1 MSMg01no104_g22.b1 CHROMAT_FILE:
MSMg01no104_g22.b1 PHD_FILE: MSMg01no104_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:41 2005
         (349 letters)



>mm_chr2_180978399_180979147
          Length = 749

 Score =  667 bits (345), Expect = 0.0
 Identities = 348/349 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgacccaaaccacaaggaggaagcaatcttttctgatacgtggtcatttctgctgagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtgacccaaaccacaaggaggaagcaatcttttctgatacgtggtcatttctgctgagta 418

                                                                       
Query: 61  ctcaatgtctgtctgtcctctgtagcctgtaagactagaaccccggcgccacagtgccct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 417 ctcaatgtctgtctgtcctctgtagcctgtaagactagaaccccggcgccacagtgtcct 358

                                                                       
Query: 121 agctcagtgggctactcagcctttaggatgaccaaactgtactttcccactgagctcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agctcagtgggctactcagcctttaggatgaccaaactgtactttcccactgagctcagg 298

                                                                       
Query: 181 caactccaatgagaacgcacaatgcccccagcgcttcctgctctgtgatgagctctggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 caactccaatgagaacgcacaatgcccccagcgcttcctgctctgtgatgagctctggta 238

                                                                       
Query: 241 agctcccaacatctctgtgaatctgaaggggttggcttgccaaggaccagcctcggctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 agctcccaacatctctgtgaatctgaaggggttggcttgccaaggaccagcctcggctta 178

                                                            
Query: 301 gagagcggttctgagagaagtggtgactggaaggggtgaaaactaacaa 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gagagcggttctgagagaagtggtgactggaaggggtgaaaactaacaa 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)