BAC Information

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BAC

Clone NameMSMg01-104G24
Chromosome2 (Build37)
Map Location 82,034,079 - 82,034,431
singlet/doubletsinglet
Overlap geneZfp804a
Upstream geneLOC100040704
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104G24.T7 (MSMg01no104_g24.b1)MSMg01-104G24.TJ (MSMg01no104_g24.g1)
ACCAG319051AG319052
length752709
length of high quality
(start - end)		358 (46 - 403)356 (73 - 428)
definitionCHROMAT_FILE: MSMg01no104_g24.b1 PHD_FILE: MSMg01no104_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:42 2005CHROMAT_FILE: MSMg01no104_g24.g1 PHD_FILE: MSMg01no104_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATATATTATTACTATGGTACAGACTTGATTTCAACATTCACATA
TATAACATGGACATGTAAAAATTTTTAACTTAGTTCTAAATATGTTACAT
TCATTCTTTAAAATCATTCTAATAGGTTATACTTTAAAATTTTTTACATG
TTCATATTTTTGCACAACTCCAATACTATGTCCCAAAGGACACCCAGCGG
TTTATATTTGAACAGTAGTATAGTAGAAAAATAGAAATGTAAAACCTACA
CACAAACAACTGTTTTAGAATAAGTTTAAAAATTGAGAGTATCAGGCGGG
AGGTGGGGAGGTATGGGATGTGGAATAGTCAGAGAGTGTATAGGGAGGAA
TANNNNNNTTTGTANNTTTTTNNCTTTTTTTTAATTTAATAATTATATTT
AGTTATATAATTTATTTTTTATTATTTATAAAATAAATTTTTTTATTATT
ATNTTTTCTATTTCCTCTTTTTTTTCTCATTTTTCTCTTTTTAAATTCTC
TTCTTTCCTCTTCTTCTTTGCCCCGTACTATCCATCTTGTATTCTCCTCA
CCCCTCCTTACTTCTCTTTTTTTTTCATCCCTATCACACCCAACTTTCAA
CCCATTTATTACTTTTTTTCTTGTCCCTCCCCATCTTAACCCACCCACCC
CATATTTTACTATTCATTTCCTATTCTCCCCTTCTCTACTTCCTCCTCCC
TC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACATGGAGGGACCCATGGCTCCAGCTTC
TTATGTAGCAGAAGTTGATCTTACCTGGCATCAAAGGGAGGGGAAGCCCT
TGATCCTGTGAAGGCTTAATGCCCCAAGAATTGCTCCTATCTAAAGTAAA
AGTAGGGGAATGCTAGGGCAGTGGGGCAAGAGTGGGCATGTGGGTGGCAT
GCACCCTCATGGATACAGGGGAGAGGAAGTGGTGGGATGTGGGGTTCTCA
GAGAAGAAACTGGGAAGGGGATAACATTTTAAATGTAAATAAATAAAATA
ACTAATAAAATATTTATTAAAATAAATTAAGGAATGCTCTATGAAATTGG
ATCTCTATCTTGCTATGTTAGTGCAATCAAGAACCTGAGTCTAGATGGGG
CATGGGCCCTAGAGGGAACATACAGCAATTATATTGCTAACATAGTGATA
TATCAGAATACCACTGAACACCCATCAGAGGAGCTTCTCCTTGCAGCTGA
TGATAATTAACCTATAGACTCGAAACTGGATAATGACAGACTTTGTAACA
CTCATATCTTATTAGGATGGGCTTATAACATCCTTCTATCAGGACATATG
GATCCTCCTAACTGATTACGTATAAAGATTATCACCCCCTTCACCTGAGT
TTAGCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_g24.b1 MSMg01no104_g24.b1 CHROMAT_FILE:
MSMg01no104_g24.b1 PHD_FILE: MSMg01no104_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:42 2005
         (358 letters)



>mm_chr2_82033875_82034632
          Length = 758

 Score =  659 bits (341), Expect = 0.0
 Identities = 350/353 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatatattattactatggtacagacttgatttcaacattcacatatataacatg 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatatattagtaatatggtacagacttgatttcaacattcacatatataacatg 264

                                                                       
Query: 65  gacatgtaaaaatttttaacttagttctaaatatgttacattcattctttaaaatcattc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacatgtaaaaatttttaacttagttctaaatatgttacattcattctttaaaatcattc 324

                                                                       
Query: 125 taataggttatactttaaaattttttacatgttcatatttttgcacaactccaatactat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taataggttatactttaaaattttttacatgttcatatttttgcacaactccaatactat 384

                                                                       
Query: 185 gtcccaaaggacacccagcggtttatatttgaacagtagtatagtagaaaaatagaaatg 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 gtcccaaaggacacccagcggtttatatttgaagagtagtatagtagaaaaatagaaatg 444

                                                                       
Query: 245 taaaacctacacacaaacaactgttttagaataagtttaaaaattgagagtatcaggcgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaaacctacacacaaacaactgttttagaataagtttaaaaattgagagtatcaggcgg 504

                                                                
Query: 305 gaggtggggaggtatgggatgtggaatagtcagagagtgtatagggaggaata 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggtggggaggtatgggatgtggaatagtcagagagtgtatagggaggaata 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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