BAC Information

Click to search

BAC

Clone NameMSMg01-105F19
Chromosome2 (Build37)
Map Location 80,769,877 - 80,770,086
singlet/doubletsinglet
Overlap genenone
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624
Downstream geneLOC100040655, LOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105F19.T7 (MSMg01no105_f19.b1)MSMg01-105F19.TJ (MSMg01no105_f19.g1)
ACCAG319738AG319739
length727715
length of high quality
(start - end)
379 (79 - 457)210 (91 - 300)
definitionCHROMAT_FILE: MSMg01no105_f19.b1 PHD_FILE: MSMg01no105_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:58 2005CHROMAT_FILE: MSMg01no105_f19.g1 PHD_FILE: MSMg01no105_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGCCTTTCCCTAAAATAATAAAACCAATATACAACAAAC
CAGCAGCCAACATCAAACTAAATGGACAGAAACTTGAAGCAATCCCACTA
AAATCAGGGGCTAGACCAGTCTGCCCACTTTCTCCCTATCTATTCAATAT
AGTACTAGAAGTCCTAGCCAAAGCAATTAGATAACAAAAGGAGATCAAGG
GGATACAAATGGGAAAGGAAGAAGTCAAAATATCACTATTTGTAGATGAT
ATGACAGTATATATAAGTGACCCTATAAATTCCACCATAGAACTCCTAAA
CCTGATAAACAGCTTCAGTGCAGTACCTGGATATAAAATTAACTCAAGCC
CTTCCAGTCCGGCCAACACTGGGGTAGCTAGGGCCCAGAGTCGGCTGACA
CCCGCCAGCAACCCACAAGACCTGCCACAGGATCGTAAGAACTCTGGTGA
GTGGAACACAGCATCTGCTCCAACCCAATCACACTGTGACTGAGACTGCA
TTAGTCAGGGAAGCATACAACCTGGCCTGATCAGGGGCTCACGTCCCTTC
CCGTTCTGCCGTACTGGGCGTATTAGGGCCCAGAGTCGGCTGTACCCTGC
AAGTAACCCACTAGACCTGCCCTGCGATCTTAAGACCTCTGGTGAGCGGT
ACACACTGGTTCGCTACAATCAAACCG
ATACAGTGCGAGCCTGGCGGCCGCTGTTCTAAAATGGAGGTGACCTATAG
AATTTCCGCGGAATTCATTAAGAGAGTGAAGAAATCAAAGCTTGGGGGCA
GAGTTGGCCTCCTCTGGTTAAAGAGCAGCAGTGGGGGAAGCCAGAAGGCT
GGGGTATGTAACTTAGGGGCACTGCCAGGGCACAGCACAGAGGTATACCT
AGGGATCCTGAAGAACTTTGCAGGCTCTGTGGCGCTATGGCTTCTATCTG
GGGGAAGTGAGAGCCATTTCAGAGCTTGTGGCACAAGACTGTCATCAACT
ACTTATGCTCTAATGGTGCCACTTCACCTTCCTACTACAGATATACTGGG
TGGAGGGGAGGTGAATAATGACAGAGGCAGGAAGATCATGAAGGGGATAT
GTAGTCCTCTGTCGAGAGATGTTGGCAGGCTGGATGAGGAAGTATAAACC
AGTCATGGCTGATGCACTTTCTTTTCACCTCTTCGTATCTTACTCGCATT
TCCCACCATTATTACTATTATTATTGCCCTACCCGTTTGTGTACATACAT
ACATATATATTTGTCACGCTCGTCGCCTTTTTCCCCCATTCCCCCTTTGA
CCGTGACTTTTTTTCCCATCGCGCCCCTGTCTATCGATCTCCCGTTACTT
GTCTTATTGCTACCGTTTTTATCCTCTGAACCCCCTACGCACGCTTCTGA
CCCCGCCCATATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_f19.g1 MSMg01no105_f19.g1 CHROMAT_FILE:
MSMg01no105_f19.g1 PHD_FILE: MSMg01no105_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:58 2005
         (210 letters)



>mm_chr2_80769677_80770286
          Length = 610

 Score =  368 bits (190), Expect = e-106
 Identities = 205/210 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgggggcagagttggcctcctctggttaaagagcagcagtgggggaagccagaaggct 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgggggcagagttggcctcctatggttaaagagcagcagtgggggaagccagaaggct 260

                                                                       
Query: 61  ggggtatgtaacttaggggcactgccagggcacagcacagaggtatacctagggatcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggtatgtaacttaggggcactgccagggcacagcacagaggtatacctagggatcctg 320

                                                                       
Query: 121 aagaactttgcaggctctgtggcgctatggcttctatctgggggaagtgagagccatttc 180
           |||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacctttgcaggctctatggtgctatggcttctatctgggggaagtgagagccatttc 380

                                         
Query: 181 agagcttgtggcacaagactgtcatcaact 210
           |||| |||||||||||||||||||||||||
Sbjct: 381 agagtttgtggcacaagactgtcatcaact 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)