BAC Information

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BAC

Clone NameMSMg01-105N23
Chromosome2 (Build37)
Map Location 122,405,429 - 122,462,492
singlet/doubletdoublet
Overlap geneGatm, Spata5l1
Upstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1
Downstream geneAA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105N23.T7 (MSMg01no105_n23.b1)MSMg01-105N23.TJ (MSMg01no105_n23.g1)
ACCAG320112AG320113
length726719
length of high quality
(start - end)
480 (77 - 556)428 (72 - 499)
definitionCHROMAT_FILE: MSMg01no105_n23.b1 PHD_FILE: MSMg01no105_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:38 2005CHROMAT_FILE: MSMg01no105_n23.g1 PHD_FILE: MSMg01no105_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,462,142 - 122,462,492)(122,405,429 - 122,405,859)
sequence
CTTTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAGTGTATCCCTCTCTTTAAGTGAAAACAGCCTGGGTTAA
GTTATTTAAAAAGACATTGAAGGGCTGCTCTGGTATTGGGACCATAAATG
TGTACAACCACACTGGGCAAAAAGAGAACAGCTCTTAAAAGATTATTTTA
TAATTCTGTAAGGATTTCATTCAAGGGTTTTGATCATACTCACCTCCACT
CTTCCTGCAACTCCTCCCTGATCCACACCTACCACTCTACCCTCTCAACT
AAATAGTTTTTAGTTCGCTTGTTTAAAATAACCCACTGAGGCCAGTTTGT
GCTTTCCACATAATCTGGGGTGTGGGGTCTCACACTGGAGCATGGTCACC
TGCTTAAAGAAAACTGATTCTCCCTCTGGAAAAGCCACCAACTGTCCATG
GTGCCTCAGCTAATGGTCAGGGTTTGTGAACTCCTTCCCCATGCTAAACT
TGGATTAGTTTGCTCTTCCTCTGCTCCTGCTGCATCCACAAGTTCACGGG
TACAGCCGTCCTGTCATGTCAGATGACGCTGTTTAGTTCTGGTCCCCCAT
CACCTCCGGTTCTTATAACCCCTCCCCATGATTACCTTTGAACTTGCAAC
GTTGGTTATGCTATAGATGCCCCATCTGTGGATGAATCCTCCAATGACAA
TCTAGTCTTTGCATTCTTCTTCTGCT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCAGACTGCAACATGAAAACCCAGCCTGG
GCAGCCTGTGGCCCCACCCTGGGAGTTTTGGATTCAAGGCTGGCAACCAC
AGTTTCTAACCTGAATTTTCAGCCCACCAAGCTGCCCTACAAATGTTAGA
CTTGCCAGATCCATCTACTTCCTGAGCCATTTCCTTAAGAATCTCAGGCC
TGCTTCTCTGGAGAACCATGACTAATACAAAGGTCCTAAGAAGAGCGTTG
CCATTCTACCCTTAAGTTTATCCTGGTTTCTTTGACACCAGGTTTCTATG
AATCCTATACTTGCATCTATTTGTAAAATGTTCTCTGAGGCATTATGGAT
TTCCCCAGCTCTAACAGGTGTTTATTGTTCATTGCTTCTTATTTTCTGAA
GCCTATTATTCCTTTATCTTTTTAGGAAAAAAAAGCAATGCTAGAATACA
AATAGGGGGCCCCAAATAATGAACATTTACATAACAAAATCATAAGTGCA
AAGTCTTATTGTTTGCAGTTGGCACTCTCAGAGGTACAGTAAGCCTTGAG
AATTACCTATTTAGTAATGCTCATTTTCTCCTTTTAGGATACAGTTTACT
GTGTCTGTGGAAGCATGAACCACGAAGAAGGAGGAGCATTTAGGTGAGTT
TAACATTAAAAATCCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_n23.b1 MSMg01no105_n23.b1 CHROMAT_FILE:
MSMg01no105_n23.b1 PHD_FILE: MSMg01no105_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:38 2005
         (480 letters)



>mm_chr2_122462142_122463021
          Length = 880

 Score =  648 bits (335), Expect = 0.0
 Identities = 347/351 (98%)
 Strand = Plus / Minus

                                                                       
Query: 48  gctgctctggtattgggaccataaatgtgtacaaccacactgggcaaaaagagaacagct 107
           |||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 351 gctgatctggtgttgggaccatagatgtgtacaaccacactgggcaaaaagagaacagct 292

                                                                       
Query: 108 cttaaaagattattttataattctgtaaggatttcattcaagggttttgatcatactcac 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttaaaagattattttataattctgtaaggatttcattcaagggttttgatcatactcac 232

                                                                       
Query: 168 ctccactcttcctgcaactcctccctgatccacacctaccactctaccctctcaactaaa 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ctccactcttcctgcaactcctccctgatccacacctaccactctaccctctcaactaaa 172

                                                                       
Query: 228 tagtttttagttcgcttgtttaaaataacccactgaggccagtttgtgctttccacataa 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tagtttttagttcgcttgtttaaaataacccactgaggccagtttgtgctttccacataa 112

                                                                       
Query: 288 tctggggtgtggggtctcacactggagcatggtcacctgcttaaagaaaactgattctcc 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tctggggtgtggggtctcacactggagcatggtcacctgcttaaagaaaactgattctcc 52

                                                              
Query: 348 ctctggaaaagccaccaactgtccatggtgcctcagctaatggtcagggtt 398
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 51  ctctggaaaagccaccaactgtccatggtgcctcagctaagggtcagggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no105_n23.g1 MSMg01no105_n23.g1 CHROMAT_FILE:
MSMg01no105_n23.g1 PHD_FILE: MSMg01no105_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:39 2005
         (428 letters)



>mm_chr2_122405229_122406059
          Length = 831

 Score =  791 bits (409), Expect = 0.0
 Identities = 425/431 (98%), Gaps = 3/431 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagactgcaacatgaaaacccagcctgggcagcctgtggccccaccctgggagttttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagactgcaacatgaaaacccagcctgggcagcctgtggccccaccctgggagttttgg 260

                                                                       
Query: 61  attcaaggctggcaaccacagtttctaacctgaattttcagcccaccaagctgccctaca 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcaaggctggcaactacagtttctaacctgaattttcagcccaccaagctgccctaca 320

                                                                       
Query: 121 aatgttagacttgccagatccatctacttcctgagccatttccttaagaatctcaggcct 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 aatgttagacttgccagatccatctacttcctgagccagttccttaagaatctcaggcct 380

                                                                       
Query: 181 gcttctctggagaaccatgactaatacaaaggtcctaagaagagcgttgccattctaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttctctggagaaccatgactaatacaaaggtcctaagaagagcgttgccattctaccc 440

                                                                       
Query: 241 ttaagtttatcctggtttctttgacaccaggtttctatgaatcctatacttgcatctatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagtttatcctggtttctttgacaccaggtttctatgaatcctatacttgcatctatt 500

                                                                       
Query: 301 tgtaaaatgttctctgaggcattatggatttccccagctctaacaggtgtttattgttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaaaatgttctctgaggcattatggatttccccagctctaacaggtgtttattgttca 560

                                                                       
Query: 361 ttgcttcttattttctgaagcctattattcctttatctttt-taggaaaaaaaa--gcaa 417
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  | ||
Sbjct: 561 ttgcttcttattttctgaagcctattattcctttatcttttgtaggaaaaaaaaaagtaa 620

                      
Query: 418 tgctagaatac 428
           |||||||||||
Sbjct: 621 tgctagaatac 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 831
Length adjustment: 9
Effective length of query: 419
Effective length of database: 822
Effective search space:   344418
Effective search space used:   344418
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)