Query= MSMg01no105_n23.b1 MSMg01no105_n23.b1 CHROMAT_FILE:
MSMg01no105_n23.b1 PHD_FILE: MSMg01no105_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:38 2005
(480 letters)
>mm_chr2_122462142_122463021
Length = 880
Score = 648 bits (335), Expect = 0.0
Identities = 347/351 (98%)
Strand = Plus / Minus
Query: 48 gctgctctggtattgggaccataaatgtgtacaaccacactgggcaaaaagagaacagct 107
|||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 351 gctgatctggtgttgggaccatagatgtgtacaaccacactgggcaaaaagagaacagct 292
Query: 108 cttaaaagattattttataattctgtaaggatttcattcaagggttttgatcatactcac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttaaaagattattttataattctgtaaggatttcattcaagggttttgatcatactcac 232
Query: 168 ctccactcttcctgcaactcctccctgatccacacctaccactctaccctctcaactaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ctccactcttcctgcaactcctccctgatccacacctaccactctaccctctcaactaaa 172
Query: 228 tagtttttagttcgcttgtttaaaataacccactgaggccagtttgtgctttccacataa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tagtttttagttcgcttgtttaaaataacccactgaggccagtttgtgctttccacataa 112
Query: 288 tctggggtgtggggtctcacactggagcatggtcacctgcttaaagaaaactgattctcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tctggggtgtggggtctcacactggagcatggtcacctgcttaaagaaaactgattctcc 52
Query: 348 ctctggaaaagccaccaactgtccatggtgcctcagctaatggtcagggtt 398
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 51 ctctggaaaagccaccaactgtccatggtgcctcagctaagggtcagggtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_n23.g1 MSMg01no105_n23.g1 CHROMAT_FILE:
MSMg01no105_n23.g1 PHD_FILE: MSMg01no105_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:39 2005
(428 letters)
>mm_chr2_122405229_122406059
Length = 831
Score = 791 bits (409), Expect = 0.0
Identities = 425/431 (98%), Gaps = 3/431 (0%)
Strand = Plus / Plus
Query: 1 tcagactgcaacatgaaaacccagcctgggcagcctgtggccccaccctgggagttttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagactgcaacatgaaaacccagcctgggcagcctgtggccccaccctgggagttttgg 260
Query: 61 attcaaggctggcaaccacagtttctaacctgaattttcagcccaccaagctgccctaca 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcaaggctggcaactacagtttctaacctgaattttcagcccaccaagctgccctaca 320
Query: 121 aatgttagacttgccagatccatctacttcctgagccatttccttaagaatctcaggcct 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 aatgttagacttgccagatccatctacttcctgagccagttccttaagaatctcaggcct 380
Query: 181 gcttctctggagaaccatgactaatacaaaggtcctaagaagagcgttgccattctaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttctctggagaaccatgactaatacaaaggtcctaagaagagcgttgccattctaccc 440
Query: 241 ttaagtttatcctggtttctttgacaccaggtttctatgaatcctatacttgcatctatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaagtttatcctggtttctttgacaccaggtttctatgaatcctatacttgcatctatt 500
Query: 301 tgtaaaatgttctctgaggcattatggatttccccagctctaacaggtgtttattgttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaaaatgttctctgaggcattatggatttccccagctctaacaggtgtttattgttca 560
Query: 361 ttgcttcttattttctgaagcctattattcctttatctttt-taggaaaaaaaa--gcaa 417
||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct: 561 ttgcttcttattttctgaagcctattattcctttatcttttgtaggaaaaaaaaaagtaa 620
Query: 418 tgctagaatac 428
|||||||||||
Sbjct: 621 tgctagaatac 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 831
Length adjustment: 9
Effective length of query: 419
Effective length of database: 822
Effective search space: 344418
Effective search space used: 344418
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|