BAC Information

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BAC

Clone NameMSMg01-105P18
Chromosome2 (Build37)
Map Location 109,522,526 - 109,522,666
singlet/doubletsinglet
Overlap geneBdnf
Upstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
Downstream geneLOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105P18.T7 (MSMg01no105_p18.b1)MSMg01-105P18.TJ (MSMg01no105_p18.g1)
ACCAG320191AG320192
length716737
length of high quality
(start - end)
338 (68 - 405)141 (89 - 229)
definitionCHROMAT_FILE: MSMg01no105_p18.b1 PHD_FILE: MSMg01no105_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:47 2005CHROMAT_FILE: MSMg01no105_p18.g1 PHD_FILE: MSMg01no105_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTGAGTTGGCCATCAGTACACTGAGTGCAGTGCAGTAGAGTCGAGTTA
ATTCATGAGTTCTTGCAGTTCAGTGCAGGTTAGCAGAGGCAGAGAATAAG
AAGGAACCAGCTAGAAGACTAGAACAAATTGCCAGGGTTAGTTTGAAGCC
AAGCAGAGTGAGAGGCCGAGAGAAGCCAGATTGAATCACTCAGCTTGGAG
AGAATTTTGAGCCAGAACAGATAGTTAAACCAGCCAGCCAGAGTTCAGAA
AGAGCTAGAAAGGATAAGTTTATTCAGCGGCAAGTCCCCAAGATTACAGT
TATATCAGACAAATAAAAGTTACAGTTACAGTCAGCACTGCTGCTTCTTC
ATTTGGGAGTATTAGAACAGAGCTCTTTGTGTATGGCCATTGAGGATGGA
AGTTAGCTTTGCCAGTGCCCCAAGCTTGGCGTCACTACCACTATCATCTT
CCATACTTCTGGATCCACAACTATACTGATAGACCAAGAGTCAACACAGA
TGTTTGTGGAAAGCAAAGCCTTACTCTTACTATCCACCTTCCTTCGTCTT
CGTTTGCACAAGGAAATGTCACTCTTATCAGCCAATAGATACATCTCTGA
GAATTTCACACCTAGAGCTTCAGCCCCAATGGCCCAACTGAAAGAGAGGA
AGCCTTCCATTTTTCT
GCTCTCCTTCCCCCGATGCTAGGCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACTGTCAAAT
TTGATGGCACTTTTCTTTGTGACATACATGTTCTATGCCTTATGACATTT
CTTTTTAAAATTAAAGATATTGCATCCTGAAAGTGTCTTGTTCTTATAAA
TAATGCATTATATGTACATGCTAATAGATAATTAGATGGTCCAGCCAGGA
GAAACATGAAAGAGAACTGGTAACTCAAAGCCTGCATAATGCGAGTGGGC
ATTTGGACATCCAGGAAATGCTATAGATCTGTCCTTATTTAATTCAGCCT
GGTGGAGATAATTAATAAGAAATGTGTTTGTCGAGAGACTGTAAGCCATT
CCCTGCTATTGGCTGGATTGCTGTTTTATTTCATAAACATTTGGCACAGC
CTCCCACTCTGGACATGATTGCCCTTTGAAGAAGCATCTATCGACTTTTA
TAAAGATGCCTAATTTAAAATAACTTCCGATGCACTAAGGAATGACAGAC
ATCACTCTTGAATTTTATTTTAATCAAATGCCCCATTCTCTTTCCCCAGT
CTACATTTCTCAACATTACACCAAATCTTAGGTAAATTTTTCCTCGAGTC
CCCCATTTATCCTTTTGCCATTCCCACATTACTAGATTAACCCGTATCTG
GCCCCACCAACCTTCCTCTATCTACCCCTTCTAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_p18.g1 MSMg01no105_p18.g1 CHROMAT_FILE:
MSMg01no105_p18.g1 PHD_FILE: MSMg01no105_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:47 2005
         (141 letters)



>mm_chr2_109522326_109522866
          Length = 541

 Score =  242 bits (125), Expect = 8e-69
 Identities = 137/141 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactgtcaaatttgatggcacttttctttgtgacatacatgttctatgccttatgacat 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| |||
Sbjct: 201 ccactgtcaaatttgagggcacttttctttgtgacatacatgttctatgttttatgtcat 260

                                                                       
Query: 61  ttctttttaaaattaaagatattgcatcctgaaagtgtcttgttcttataaataatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctttttaaaattaaagatattgcatcctgaaagtgtcttgttcttataaataatgcat 320

                                
Query: 121 tatatgtacatgctaatagat 141
           |||||||||||||||||||||
Sbjct: 321 tatatgtacatgctaatagat 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)