BAC Information

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BAC

Clone NameMSMg01-106B05
Chromosome2 (Build37)
Map Location 55,648,918 - 55,649,580
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt13, LOC666936, Kcnj3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106B05.T7 (MSMg01no106_b05.b1)MSMg01-106B05.TJ (MSMg01no106_b05.g1)
ACCAG320258AG320259
length1,2291,243
length of high quality
(start - end)		824 (52 - 875)664 (91 - 754)
definitionCHROMAT_FILE: MSMg01no106_b05.b1 PHD_FILE: MSMg01no106_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:59 2005CHROMAT_FILE: MSMg01no106_b05.g1 PHD_FILE: MSMg01no106_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCGTTTTTTTNNNGACCTTGCGCGCTATXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCAGTTCTGAGCCCCTTTTTTTAATGGGGTTGTT
TGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCGAATCTGTTGGT
GGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAG
TTTCATTAGGTCCCATTTGTCAATTCTAGATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTAAGTGTCTCTGGTTTTATGTGAAGTTC
TTTGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGA
TTCTCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCC
CTTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACA
ATTGCTCTGTAGTAAAGCTTTAGGTCCGGCATGGTGATTCCACCAGAGGT
TCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCC
AGATGAATTTGCAAATTGCTCCTTCTAATTCATTGAAGAATTGAGTTGGA
ATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATAGC
CATTTTTACAATATTGATCCTGCCAATCCATGAGCATGGGAGATCTTTCC
ATCTTCTGAGATCTTCTTTAATTTCTTTCTTCAGAGACTTGAAGTTTTTA
TCATACAGATCTTTTCCTTTCCTTAGTTAGAGGCACGGCCGAGAAATTTT
AAATTAATTTGGGACTAATGAGAAAGGGGGTTGTTTCCCCAAATTTTCTT
TTCCCCCCGGGTTATTTCTTTGGGTTAAAAAAAGGCCCTTTGACTTGGTT
GGAGAATAATTTTTTATATCCGCGTTTCTTCTCCCAAAAATTGTTTTTTC
CGGTTTATAAAGATCTCTCTGTGGAAAATTTTTGTGGGGCCCTCTTTTAT
ATTTAGTCTCATTCTCCCCCCCACAAGAG

NNCCATTTTTTTTTNNATAGCATGGATGCTGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTGAAGAAAAATATGAA
ATCTAGTGTCTAACTAAGGAAACCCTTAATAATTCCTACAGTTTTTCTAT
TTCAATTTCTTAATAACTGCTTACCTAATCTCAAGATTATGCAGCTCTAC
TTCTTTTAATAAAAGTGTTCAGTCAGATGTTTAGGTTCTGGTTTCCATCT
AAGATCTCAGTCTAAATTAGCAACATCAACATGGCATTTATGATTCTAGA
GGATTACAAATAGCAACACAGTGTTGCCTTGTTTGTAGTTCATTAATCTT
TGATTTAAGTTTAGACTATATATTATATTTCAATCAACGTTGAATGACTT
GTGCATATTTATCAATTTGTCTAATAAATTTTATTTTTAGGACAATAGTA
TGGCTGGAGTGAACACATGAAACTTTCTATTGGAGTTGGTCAACAAAGTA
AATAGACGAACCAGATATCAGATTAAACATATTTTATCACTAATTGATCA
ATTTCCCAAAGTGACTTCATCATTAATTTGTCTTTATTATATATAGTATG
TTAATATTGAACATGATATAAAATTTTACCGTTTTATGCCCCATCTTCTT
CTAAATTTTAATCATCTGTTTGAGCAATCTGTGAAGTACTCTAAAATTTT
CTAAGTCGTAGTTGAATAATGGTCTAACAAGCATAAAGGTTAATAAATGC
TACAGATTTATCTAGTGAAAGCAACAGCAGGTACATAAACAAGAAATCAT
TATTTTTCATGATGCCTTGTGAGAATTACTTTTTCTTATTTGACTTTCCA
CAAAGTACCTGCATTTGGACTTCTGACTAGTATAAAGTTGTGACATTACC
TCTGAAAATTAAAACCCCTGATGTAGCACACTACAATTAAAAGGTTATGA
GGTAGATATTTAATGTAAACCTTTATATATAACATGCTTCATAGAGCTTA
AGCCACACATCTTTACATAAAAATGGGGAAATAGTTAAAGGAAATAAATA
ATTTTGCATTTTATTGGCCAACAAGCCTTTTGGTCTTTTAATAAAAAGGT
TATGGGGGTGGAAAGATATTATAAAAATTCCTATTTTTTAGTGAAAATAC
CTTTGGCCCTTATATTAAAAAATTCTTGAAAGATAAAAGAATATTTATTT
GTGCCTAAAAAAAATAAAATCCTTTCCAGCTTTTATTATAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_b05.g1 MSMg01no106_b05.g1 CHROMAT_FILE:
MSMg01no106_b05.g1 PHD_FILE: MSMg01no106_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:59 2005
         (664 letters)



>mm_chr2_55648718_55649782
          Length = 1065

 Score = 1218 bits (630), Expect = 0.0
 Identities = 655/666 (98%), Gaps = 7/666 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatatgaaatctagtgtctaactaaggaaaccct---taataattcctacagtttttc 57
           ||||||||||||||||||||||||||||||||   |   |||||||||||||||||||||
Sbjct: 201 aaaatatgaaatctagtgtctaactaaggaaa---taaataataattcctacagtttttc 257

                                                                       
Query: 58  tatttcaatttcttaataactgcttacctaatctcaagattatgcagctctacttctttt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tatttcaatttcttaataactgcttacctaatctcaagattatgcagctctacttctttt 317

                                                                       
Query: 118 aataaaagtgttcagtcagatgtttaggttctggtttccatctaagatctcagtctaaat 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aataaaagtgttcagtcagatgtttaggttctggtttccatctaagatctcagtctaaat 377

                                                                       
Query: 178 tagcaacatcaacatggcatttatgattctagaggattacaaatagcaacacagtgttgc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tagcaacatcaacatggcatttatgattctagaggattacaaatagcaacacagtgttgc 437

                                                                       
Query: 238 cttgtttgtagttcattaatctttgatttaagtttagactatatattatatttcaatcaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 438 cttgtttgtagttcattaatctttgatttaagtttagactatatattatattttaatcaa 497

                                                                       
Query: 298 cgttgaatgacttgtgcatatttatcaatttgtctaataaattttatttttaggacaata 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cgttgaatgacttgtgcatatttatcaatttgtctaataaattttatttttaggacaata 557

                                                                       
Query: 358 gtatggctggagtgaacacatgaaactttctattggagttggtcaacaaagtaaatagac 417
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaatggctggagtgaacacatgaaactttctattggagttggtcaacaaagtaaatagac 617

                                                                       
Query: 418 gaaccagatatcagattaaacatattttatcactaattgatcaatttcccaaagtgactt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaaccagatatcagattaaacatattttatcactaattgatcaatttcccaaagtgactt 677

                                                                       
Query: 478 catcattaatttgtctttattatatatagtatgttaatattgaacatgatataaaatttt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 catcattaatttgtctttattatatatagtatgttaatattgaacatgatataaaatttt 737

                                                                       
Query: 538 accgttttatgccccatcttcttctaaattttaatcatctgtttgagcaatctgtgaagt 597
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cccgttttatgccccatcttcttctaaattttaatcatctgtttgagcaatctgtgaagt 797

                                                                       
Query: 598 actctaaaattttctaa-gtcgtagttgaataatggtctaacaagcataaaggttaataa 656
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 actctaaaattttctattgtcgtagttgaataatggtctaacaagcataaaggttaataa 857

                 
Query: 657 atgcta 662
           ||||||
Sbjct: 858 atgcta 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1065
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1055
Effective search space:   689970
Effective search space used:   689970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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