BAC Information

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BAC

Clone NameMSMg01-106E22
Chromosome2 (Build37)
Map Location 145,032,886 - 145,033,674
singlet/doubletsinglet
Overlap genenone
Upstream geneSnx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106E22.T7 (MSMg01no106_e22.b1)MSMg01-106E22.TJ (MSMg01no106_e22.g1)
ACCAG320430AG320431
length1,2361,357
length of high quality
(start - end)		791 (88 - 878)65 (120 - 184)
definitionCHROMAT_FILE: MSMg01no106_e22.b1 PHD_FILE: MSMg01no106_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:33 2005CHROMAT_FILE: MSMg01no106_e22.g1 PHD_FILE: MSMg01no106_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCCCNTTTNNAAACACTGGGCGCTATXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTAAGTATGTCGGGTTCCCATTATGGGAGTTATTTGTCAT
GCATCCATCAGGTTAAACCCTTGCTCAGATCTTGTATATTTTGCTCAGAT
CAGTGGATATTTTGACTTCTTGATTATTCAGGTACAGAGAAGGCTGTATT
AAAAATACCTCAGTATTGTAATGTCTCAGTTTGTCCCTACTTGTGATTGT
TACAGTCTGTGAATTGTATCTTGAGATGATTAACTTCTTAGAATACTTAA
ATTGCTGTGAACAGTATTTTCTATCACTAATTATTGACCCTTTAATTCTC
TTGGTTCTTAAAACTACTTTATAGCAATGTCTAATATGATTCATTAGGGT
CTTTTCTTAGTGTTTTGCTATAGAATTTCATTCTTAACTATTCAGCCATT
TGTACTTTTACATCATATCATCCATTATAAACAACATAAAGAACTCTTGT
TTTTCTATGATTCAGTTTGACAATAGTCTTAAGTTTAGTCCACTCACATT
TAGTATTCATTTGTGTGAATTTGCTTTTACCTTCTGATTTTATAGCTTCA
CATTTTCGTATCCTCTATTTCTTCTTATCATTAGTTTTGCTCTCTTCTTT
GAACCAACAAGATTCCTTTTGTCATGTGTGTTCTTCTTTTCATTTGGAAG
TCACATTCCCTAGTCTTACTACTTCAGAAACTCCTCATAATTTTAATGTA
CACATTTATATTTAACTTAATAAACTTACATTTTTATGAAAATATCTATT
CTACCTCAAAACAGAAGAATATGATGTTTTAATTCTGACCACTTACCCAA
ATTAATTATCATTATTGCTCTATGCAGTTTAAGATGCTTATATATGTGTT
TATTCACACTATTGGATGAATTTCTTTAAAATTCTGAGTGACTCAAATGT
GTAGGACCCTATTATATGTTTAGGGTCTTCCCATGGAACCTCTAAAGTCT
TGGGAATTAAATGAAAAAAAAATTTAAAACCCCCCTTGGCAAAACCTTGG
GCAAAATATTTTTTGGGAAAAGAGTTTTTTTTTTTTCTCGCCAGAAACCC
ATGGTAAAAAGAGGAATTTTCTCCCCCTTTTCCTTTTGTTGGGGAAAAAT
AAATAAATGGGCCTCTTTCTTTACACCACAAAAGGGGGGCCCCTTGTTAT
TATTAACCCTTTTATCTTGGGACGCCCTCCTCTAAC

NNCCTCTTTTTTTNTTAACATGGTAGCGGGGCGCCTGGCTCGACXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTTCTGGATCCTGGGGCCTTCTCCA
AGGAAGCTGTGTCCCGTTTTCAAAGACTAGGGCAACCTGGCTTAGGGTAC
GAGGATATAAGGGCCATCTGGGCATAGACTCTAGGAAAATACCATAGCAG
CCTACGTTCTGAACTGGTTGCCTGACCCTGGTGAATTTGAGGAATTTGCA
TTTTCTTTATGGACACCCCAACACCTTCCAACAGTGTATGTGATCTGGGG
CTAAAAAAACGGGGTTTAATTTCATTTTTTTGGGGATCGGGGGTTAAAAA
AAAAAAAAAAAAAGGTTTAGGGTTTGGTGGAATCGCTCNNNTGNTAGNAN
NNNTTTTTTTTTTTTTTTCCCCCCCCTTATAAAAAAATAATATGTGTTGT
TGCCCTCTCTTTTATATAANNNNNANAATCTTCTTTNNNNNNNNCGNNAA
CCCTCATTGNNNCAAACAGAGATGCATATAAAANNNNNNNCNNNNNNNNN
NTNNTTTATGTATTTTTTTTTTTTTTTTTTTTTTTNTTTGCCCNNNNNNN
NNNNNNNNNNNNNCAAACACAAGCACTTCCCCTGTAGTAGGGGGNNACCC
CNNNNNNNNNNNNTTTTTTTGTTNTTTTNTTTTTTTTTCTTTTCTTTTTT
TTTTTTTTTTTTTTTCTTTTTTTTTTTCTNNTTTTTTTTTTTTTCTTTTT
TTTTAGTTTTTTTTTTTCGTNNTTNTTNTTNTTTTTTTATTTTTATTATA
CTCTCTTTTTTTTTTTTTTTCTATTTTTTCTTTTTCTTTTTTTTTTNNTT
TCTTTTTTTNTTCTTTTTCTTTTTTNTTCTCTTNTTTCCTTCTCTTTGAC
TNNNNTCTATCGTTTNTNNNTCNNNNCNNNTNTTNTTTTTCCCCNNNNTT
TTTTTTTTTTTTTTTTTTTTTTNNNNNCNNTNTTTGTCCCTNNNNNNNNN
NNTGTCCACNNNNNNNNNNTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTTTNTTTNNNTNNTNNNNTNNNTTNTTTTTNT
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCCTTTTTTCTTT
TTTTTTTTTTTTTTTTTTTTTTTTTCCTCTTTTTTTTTTTTTTTCTCTCT
TTTTTTTTCTCTTTCTCTCTCTTCTCTTTCCTTTTTTTCTTTTTTTTTTT
CTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_e22.b1 MSMg01no106_e22.b1 CHROMAT_FILE:
MSMg01no106_e22.b1 PHD_FILE: MSMg01no106_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:33 2005
         (791 letters)



>mm_chr2_145032686_145033876
          Length = 1191

 Score = 1487 bits (769), Expect = 0.0
 Identities = 784/789 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttatttgtcatgcatccatcaggttaaacccttgctcagatcttgtatattttgctca 60
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 989 agttatttgtcatgcatccatcaggttaaacttttgctcagatcttgtatattttgctca 930

                                                                       
Query: 61  gatcagtggatattttgacttcttgattattcaggtacagagaaggctgtattaaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gatcagtggatattttgacttcttgattattcaggtacagagaaggctgtattaaaaata 870

                                                                       
Query: 121 cctcagtattgtaatgtctcagtttgtccctacttgtgattgttacagtctgtgaattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 cctcagtattgtaatgtctcagtttgtccctacttgtgattgttacagtctgtgaattgt 810

                                                                       
Query: 181 atcttgagatgattaacttcttagaatacttaaattgctgtgaacagtattttctatcac 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 809 atcttgagatgattaacttcttagaatacttaaattgctgtgagcagtattttctatcac 750

                                                                       
Query: 241 taattattgaccctttaattctcttggttcttaaaactactttatagcaatgtctaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 taattattgaccctttaattctcttggttcttaaaactactttatagcaatgtctaatat 690

                                                                       
Query: 301 gattcattagggtcttttcttagtgttttgctatagaatttcattcttaactattcagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gattcattagggtcttttcttagtgttttgctatagaatttcattcttaactattcagcc 630

                                                                       
Query: 361 atttgtacttttacatcatatcatccattataaacaacataaagaactcttgtttttcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atttgtacttttacatcatatcatccattataaacaacataaagaactcttgtttttcta 570

                                                                       
Query: 421 tgattcagtttgacaatagtcttaagtttagtccactcacatttagtattcatttgtgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgattcagtttgacaatagtcttaagtttagtccactcacatttagtattcatttgtgtg 510

                                                                       
Query: 481 aatttgcttttaccttctgattttatagcttcacattttcgtatcctctatttcttctta 540
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 509 aatttgcttttaccttctgattttatagcttcacattttcatgtcctctatttcttctta 450

                                                                       
Query: 541 tcattagttttgctctcttctttgaaccaacaagattccttttgtcatgtgtgttcttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcattagttttgctctcttctttgaaccaacaagattccttttgtcatgtgtgttcttct 390

                                                                       
Query: 601 tttcatttggaagtcacattccctagtcttactacttcagaaactcctcataattttaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttcatttggaagtcacattccctagtcttactacttcagaaactcctcataattttaat 330

                                                                       
Query: 661 gtacacatttatatttaacttaataaacttacatttttatgaaaatatctattctacctc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtacacatttatatttaacttaataaacttacatttttatgaaaatatctattctacctc 270

                                                                       
Query: 721 aaaacagaagaatatgatgttttaattctgaccacttacccaaattaattatcattattg 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaaacagaagaatatgatgttttaattctgaccacttacccaaattaattatcattattg 210

                    
Query: 781 ctctatgca 789
           |||||||||
Sbjct: 209 ctctatgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 791
Length of database: 1191
Length adjustment: 10
Effective length of query: 781
Effective length of database: 1181
Effective search space:   922361
Effective search space used:   922361
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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