BAC Information

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BAC

Clone NameMSMg01-106H10
Chromosome2 (Build37)
Map Location 79,608,392 - 79,608,733
singlet/doubletsinglet
Overlap genePpp1r1c
Upstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2
Downstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106H10.T7 (MSMg01no106_h10.b1)MSMg01-106H10.TJ (MSMg01no106_h10.g1)
ACCAG320544AG320545
length1,3171,292
length of high quality
(start - end)
334 (126 - 459)280 (132 - 411)
definitionCHROMAT_FILE: MSMg01no106_h10.b1 PHD_FILE: MSMg01no106_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:56 2005CHROMAT_FILE: MSMg01no106_h10.g1 PHD_FILE: MSMg01no106_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAATTCTTTTTNTAACATTGCGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCCCAGAGGCCTCTGTGCCCTTATAGTAATTCGCATGAGCTAG
ATGTAGTCTCATCACCCCTTGAACGATGTCAGGTGTGTTCTCTTTCATCT
TCCATTCATATTGCAACTGCTTGTGATAAATGCTGAATCCCTGGGTTTGT
AATCCAGATTTAAAAATTATAGTAACAGCTTAATTTTGCCCACATTGGAA
AAAAAAACTATCTTTTTTTCTTTTTTTTCTTTTCTTTTTTTTTTTTTTTT
TGCATGTGTTTTATTCATTGACTCAATTACTACCGCATGCTGCAGGCATT
TATAAAATGACTTCTGTCTGCCAGGTCACAGATTAAATGCTGGAGCTGAA
ATGTGCCTTTCGTCATCTCTGTCAACAGAGAAAATGTCAGATGAGAAAGT
GAGCCGTGTGTAAGCTAACTATTGGCTGCCTGAGATGTATTTGGATAGCA
GCAATTGAAGGCGGAGGAGGAAGTAGCCACCTCTGCCTACAACATTCAGG
AGAGGCTCCACAGGAGAAAGAGACTTCTGTGCCAGAGGTGGGGCAAGCAA
GCTCTTAAAAGAGAGGAGTGGAGGGTGGATACCAGGTGGTTGATTTGTCA
TAACTGGACTGTGCTACTGTGAAGGGCCATCTGTGTTCCAAACTCTGTGA
GCTGCTGAGGATCTCCTGAGGCCTCTATACAAGTCTGGGCTGTGTTCTGA
GAAAGCAGCCCATTCTTATAACAATTGTTTACTTATGATAAAAAATAATG
GGTTTCCCTGTAACATTTTAAACTTTGATACTTTGCTCCCATTTCCTACC
TTGGTTCCCTTCTATTTTTTTCTTGCTCTTGTGAAAAATATTTATATAAT
GCATTATGTAGTTTTACACATTTCCATTTTTAAAAATAAACTTGTATACA
TTTGTCAAATGTCCCTTCATTTTTCCTGGTTCCTTTCCCTCCTTATCCCT
TTTAGTCCCTTGGTCTCAATTCTTCCAGTCTTAATAAATTTCCATTTTGT
GCTTTTTATGGTTATCATATATATTCTCTCTCTCTTTTCTCTTTTAATCT
ACCTTATTTTTTATATCCCTATCTCTTGTAATTAAATATCCTCCTTTGTC
CTTTATATACATCAGTATTTCTTTTTTCACACCTTTCTATAATTCTTTTA
TTTTCTTCTAATAAACATATATTCTCTTTCCATAAAACTGATATACTTCA
TTTTTAAATGTTATTATATACCTTCTGTGTTTATTGATATCATGTCCAAA
AATCTTACTCGTTGTTA
CGTGTTTTTTCTATTCCATGTGAGGCGTGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTAAACATTGCTAAGGCTG
TTGGAAAAAAGTTTCTTTCCTTATGGAACACTGTTGTGTGAGTGTGATAC
TTCTTAATTTTTAAAAATGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTAAGGCAGAGTCCAACATTGAGTGTCTTCCTCAATTCCTCTCTCACT
GACTGGATTGCATGCCTGGCGAGCTCCAGAGACAATGCTGTCTTTGGATC
CCCAGTGCTGGTTTTACACGACCACAATGCCATGACCTTCTGGTTTGATT
TGGTTTGGTCTGGTCTGGTCTGGTCTGGTCTGGTCTTGTCTTGTTTTGTG
TTTGTTTGTCTTTTCTGTGGGATTGGAACTCAGGCCCTCATACCTGTCTG
GCCAGCACTGTATTTAAACCCTTCTCCAGCATGAGAGCTTATGCAAATTG
GTGATATATCAAAGATATAAGGGATTTGGTCCTTATATATTGTTAATCTG
ATTTTTATTTTTTAGTTTTAATACATCAGCTTTATATCACTTTACTCTCT
TTTTTTTCTTTAGCCCTTCCCACTCTCAAGTATTTATTATCTTTCTTATA
TTTTTAATGTGTTTGCGTCTATCTGTATGTCTGTGTACTTTGTACTTTAG
TGCACTTTTTTTTCCTTAATTGTTCATCCTATTTTGTACTTTCTTTTCTT
ATATAATCTTTTGTTTGTTTGTTGTTTTCGTTCTTTTAATTTTGTTTTTT
TTTTTTTATCCCTGACTCTCCTGTTAACTTATTTTGTTTATTAATTTTCC
TCTTTAAATTTCTAATTTTTGCTCTGTCTTCTGCTTTTCCAATTTTTATT
ATTTATTTTTTTTAGGTTTTTTTGCCTTTTCTTTTTTTTTTCTTTTCTTT
TATTCTTTTTTTATTAATGTTTTTTTTCTCCTTTTTTTAATCTCTCTCCT
CACTTTTTTGCTTCTTGTTTTTTTATCGTTTTTATTTGTTATCCTGTCTC
TGTTCTTATTAAACATTTCTTTTGTCTCCTTCCTTCCTTTTTGTTTTTTC
TATGGTAAATTGTTACATCTTTATTTCTACATGTTTCAACATTTGTATTT
TTTAGACTCTCTCTTTTTTATACTCTTATTCTGTTATTATTCTACTATAT
CTATCTCTTTGTTATGATTCTTTTTATTCTCTTACTTTATTTTTCTATAT
CTTCCTGTTCTTCTCCTACTTTATCATAATCTTTGTACTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_h10.b1 MSMg01no106_h10.b1 CHROMAT_FILE:
MSMg01no106_h10.b1 PHD_FILE: MSMg01no106_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:56 2005
         (334 letters)



>mm_chr2_79608200_79608933
          Length = 734

 Score =  487 bits (252), Expect = e-142
 Identities = 316/350 (90%), Gaps = 24/350 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcaggtgtgttctctttcatcttccattcatattgcaactgcttgtgataaatgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atgtcaggtgtgttctctttcatcttccattcatattgcaactgcttgtgataaatgctg 252

                                                                       
Query: 61  aatccctgggtttgtaatccagatttaaaaattatagtaacagcttaattttgcccacat 120
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aatcagtgggtttgtaatccagatttaaaaattatagtaacagcttaattttgcccacat 312

                                                                       
Query: 121 tggaaaaaaaaactatctttttttcttttttttcttttctttttttttttttttttgcat 180
           || |||||||||  | |||||||||||| ||| |||||    ||||||||||||||||||
Sbjct: 313 tgaaaaaaaaaa--a-ctttttttctttcttt-ctttt----ttttttttttttttgcat 364

                                                                       
Query: 181 gtgttttattcattgactcaattactacc----------------gcatgctgcaggcat 224
           |||||||||||||||||||||||||||||                |||||||||||||||
Sbjct: 365 gtgttttattcattgactcaattactacctgactcaattactaccgcatgctgcaggcat 424

                                                                       
Query: 225 ttataaaatgacttctgtctgccaggtcacagattaaatgctggagctgaaatgtgcctt 284
           |||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||  
Sbjct: 425 ttataaaatgacttctgtctgccaggtcacagattagacgctggagctgagatgtgccaa 484

                                                             
Query: 285 tcgtcatctctgtcaacagagaaaatgtcagatgagaaagtgagccgtgt 334
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gcgtcatctctgtcaacagagaaaatgtcagatgagaaagtgagccgtgt 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)