BAC Information

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BAC

Clone NameMSMg01-107B19
Chromosome2 (Build37)
Map Location 145,160,882 - 145,161,560
singlet/doubletsinglet
Overlap geneSlc24a3
Upstream genePpia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneLOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107B19.T7 (MSMg01no107_b19.b1)MSMg01-107B19.TJ (MSMg01no107_b19.g1)
ACCAG321016AG321017
length1,2331,246
length of high quality
(start - end)		629 (88 - 716)681 (91 - 771)
definitionCHROMAT_FILE: MSMg01no107_b19.b1 PHD_FILE: MSMg01no107_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:31 2005CHROMAT_FILE: MSMg01no107_b19.g1 PHD_FILE: MSMg01no107_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCAGATATTANNNAGGCATTGGGCGCTATAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCACTGATGACAAGTGACCGTTCAGTGATGGGGCTGTGCT
TCTGAGACATGGCTTTGCCACAAACTCTTGTCTTCAATATTCTTGCTTTG
CAGTTCCTCATGATACACAGTAGCCACAACTTATCGTCAGGGGAATAGAA
GACCTTCATGGCTATCTGAAATCATGCAGATGCCGAATTCCACTGTTTTC
TCCTCTATAGGCATTACTATGATAGTGTAGTTAAAAATTAGATACACTGA
AGTATAAGAATAACTGGCAATAAAACAGAATAATTGTAATAATACATCAT
AATAAAGTTATATTATTGGGGTATCTTTCTCTAATTATTGTGTTTAAAGG
AAATACCTTATAGCTTCTGTGTGGCATATTTGAATTGCCATCATAATTAA
TCTTGTGCTTTGGAGTCATTTAAAAGTAGAATATAGATTACTTAAATACA
AGTGCTCTGATACTGCAGCAGTTACTCTGGTGACCAGATGGTTAACAGGA
GGCTTGCACACACAGCATGGATGGTGATCCTGGACAAAAGTGTAATTTCA
CATCCCGGGTGGGACAGAGTGTTGTGGTGTCAGATTGCAGCATGAGACTG
AGGTGCAGTTTAAAATGTATTACTTCCTGTTTTCTAGAACCTTCCGTTTG
ACCACAGGTAGCTGAAACCATGGGAAACAAAGCTGCAACCATTATGTGAG
GATGACAAAATATGGAGAAGCAACAGAGATTTGAGTGTGCTGATAATCCT
ATCAGACACAGAGGGGCAGGTATGATTTTTTTTTTCCAGAGCATAAAAGC
TCTTGCGGGGCTTAGTACCCAAGTGTGGTTATAAAGTGAACTGATCTATG
AAAAATCTTTGGAGAAAAATCAGTTTCGAATTCTAGTGCTGAAATGTCCA
CTCCAATCCCACAGGGGCCTAAAAAAAACACAGGTCCACGGAGGCATTTA
GCTATTAGGAAACACTCCGGGCTTTTTTGAAACTACCCTAATCCAAGCCC
TCATTGGAATTCCGGCTTTGTGCTTTTTAAAGGGCCCTTTTCAAAAAATC
TTTCTCCGAAAGGTCAAAATTTTCAAAAAATCTCCCCCCCCTCCCAAAAA
AATAGGCAATGGTGGTGTAAACTCTTCCAAGGGCGTATTCTCCCTTGTTC
TACTAACATAAGGCCCTAAAACTCTTCTGTCGC

NCCCGTTTTTTTNNNATAGATGTGATGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTATAACATGGACGTTTAG
ATAACCATTGTAAAGAAGGACCTACTACTTCACAGTGGCTTCTGTTTCAT
CCTCCCCTACTCCCCTCCCTGCTTGTCTCGGTGGCTATTGAAGTGATATG
CATTGGTTCCTTTCCCTTTATTCTTTATGGATACCATGAAACTTACAAAC
ACAGATGGTTATTCAATCTGCCTTAAGCTGGTCACAACATACCTTGATTA
CATAAAAAATTTCTTTTCATTTCTCCTCCTACATTTATTACTGACACAGC
AGTTTATATCTTTTATGTGTCATGAATCCATCACCAGGTAATTTCAGGCG
CTTGTATTTTTTGTAATAGTTGTATTTTAACTTTTTTCAGCATTAGGGAT
TAACCCAGATATGTGGCCTTGCGAAGCAAGCACTACCACTGAGTCACTCC
CTCAGCCTTTATTATTTAACTTTTATAATAGACATAAAGTGATTGATGCA
CTACCATTACAATGTTGACACATTCTAACCTGATTCTAACTTTTCTGTTG
AGTTTTGTGCTTTTATATGCTTTCCACTCGTCCCTATCTTTTTGCTTCAT
TTTTAAGAATTGCTTTTAAAACTTCTAGTGGTTATGAACTTATACTGTGT
TTGTCTGCCTAGGAAAGTCTTTCTCATTCACTTCTGGAGGGCAGCTTTAC
TAGATAAAGCATTTGTGACTGGTATCTGGTTTTTGCCTTAACAGTTTAAA
TATTTTTGCCTATACTTTCCTGGCACTCAACATTTCTACTGAAAAATCTG
TTCATAGTCTTGAAGAAGTTCCCTCATTTATATGATGGATTTTTCTCTCA
CCGTTTTTCAAAATATTTTTGTTGTTTCCTTTTGAGAACTTTAATATAAC
CCGTGGCGGGAAAATACATCTTTAATTTGAATCTTCTCTGAATTCTTTGG
CTTTTTACAGAATTTAAATGGAATTTTTCCTTTTACCATTTGTAAAAGCC
CCTTTATCCCTGTTTTCTGGGGGGGGAATTTTTTTTTGATATTCTTTTGT
AAATTTGTTAAATGTTAAATATAAACCCCCTTTACACAAAAAAAAATTTC
TTTTTTTTGTCGTACCTTTCTAGGAAAAACTGCTCTTTTATTTATCCTCC
CCCTCNTGGTTAAATATATATCACTGTCGGTATATATTCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_b19.g1 MSMg01no107_b19.g1 CHROMAT_FILE:
MSMg01no107_b19.g1 PHD_FILE: MSMg01no107_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:31 2005
         (681 letters)



>mm_chr2_145160680_145161760
          Length = 1081

 Score = 1266 bits (655), Expect = 0.0
 Identities = 673/679 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   acgtttagataaccattgtaaagaaggacctactacttcacagtggcttctgtttcatcc 62
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 203 acgtttagataaccattgtaaagaaggatgtactacttcacagtggcttctgtttcatcc 262

                                                                       
Query: 63  tcccctactcccctccctgcttgtctcggtggctattgaagtgatatgcattggttcctt 122
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcccctactcccatccctgcttgtctcggtggctattgaagtgatatgcattggttcctt 322

                                                                       
Query: 123 tccctttattctttatggataccatgaaacttacaaacacagatggttattcaatctgcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tccctttattctttatggataccatgaaacttacaaacacagatggttattcaatctgcc 382

                                                                       
Query: 183 ttaagctggtcacaacataccttgattacataaaaaatttcttttcatttctcctcctac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttaagctggtcacaacataccttgattacataaaaaatttcttttcatttctcctcctac 442

                                                                       
Query: 243 atttattactgacacagcagtttatatcttttatgtgtcatgaatccatcaccaggtaat 302
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 443 atttattactgacacagcagtttatatcttttatgtgtcatgaatccatcaccaagtaat 502

                                                                       
Query: 303 ttcaggcgcttgtattttttgtaatagttgtattttaacttttttcagcattagggatta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttcaggcgcttgtattttttgtaatagttgtattttaacttttttcagcattagggatta 562

                                                                       
Query: 363 acccagatatgtggccttgcgaagcaagcactaccactgagtcactccctcagcctttat 422
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 563 acccagatatgtggccttgcgaagcaagcactactactgagtcactccctcagcctttat 622

                                                                       
Query: 423 tatttaacttttataatagacataaagtgattgatgcactaccattacaatgttgacaca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatttaacttttataatagacataaagtgattgatgcactaccattacaatgttgacaca 682

                                                                       
Query: 483 ttctaacctgattctaacttttctgttgagttttgtgcttttatatgctttccactcgtc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttctaacctgattctaacttttctgttgagttttgtgcttttatatgctttccactcgtc 742

                                                                       
Query: 543 cctatctttttgcttcatttttaagaattgcttttaaaacttctagtggttatgaactta 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cctatctttttgcttcatttttaagaattgcttttaaaacttctagtggttatgaactta 802

                                                                       
Query: 603 tactgtgtttgtctgcctaggaaagtctttctcattcacttctggagggcagctttacta 662
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 803 tactgtgtttgtctgcctaggaaagtctttctcattcacttctggagggcagctttgcta 862

                              
Query: 663 gataaagcatttgtgactg 681
           |||||||||||||||||||
Sbjct: 863 gataaagcatttgtgactg 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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