Query= MSMg01no107_n02.b1 MSMg01no107_n02.b1 CHROMAT_FILE:
MSMg01no107_n02.b1 PHD_FILE: MSMg01no107_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:13 2005
(618 letters)
>mm_chr2_7988154_7989171
Length = 1018
Score = 955 bits (494), Expect = 0.0
Identities = 539/572 (94%), Gaps = 30/572 (5%)
Strand = Plus / Minus
Query: 60 ctttaaatttaaaactccctaaaccaccaaccaaagagtatacaaggagggactcatggc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 ctttaaatttaaaactccctaaaccaccaaccaaagagtatacaaggagggactcatggc 959
Query: 120 tccagccgcatatgtagcagaggatggccttgtgggacatcaatgagaggagaggccttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tccagccgcatatgtagcagaggatggccttgtgggacatcaatgagaggagaggccttt 899
Query: 180 ggtcctatgaaggattgctaccccagtgtaggggaatgccaggacagggaagcaggagtg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 ggtcctatgaaggattgctaccccagtgtaggggaatgccaggacagggaagcaggagtg 839
Query: 240 ggtgggttagttaacttggacggggcggcagggggggagagag-------------aatg 286
||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct: 838 ggtgggttagttaacggggagggggcggcagggggggagagagttttcggaggggaaatg 779
Query: 287 aggaaaggagataaaatttgaaatgtaaataaagaaaatatctaataaaaaaaagaaaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aggaaaggagataaaatttgaaatgtaaataaagaaaatatctaataaaaaaaagaaaaa 719
Query: 347 gaaaaaaaatttaaaactcccctttccctcgatatcataagcaactgggattttagacct 406
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 g-aaaaaaatttaaaactcccctttccctcgatatcataagcaactgggattttagacct 660
Query: 407 gcacaaggaaccctggcttcagaatgccttcttccattctgataatcaattacttggtgt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gcacaaggaaccctggcttcagaatgccttcttccattctgataatcaattacttggtgt 600
Query: 467 tacagacctttgtagacatttaattacatttaaactgtaattatatatatatatatatat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tacagacctttgtagacatttaattacatttaaactgtaattatatatatatatatatat 540
Query: 527 atatgtacatatatacatacatacctacatgcatataggtgtatgcatgtgcatgcgtat 586
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 atatgtacatatatacatacatacctacatgcatataggtgtatgcatgtg--------- 489
Query: 587 gtacacacatgcacatatggcaacaagtgtag 618
|||||||||||||||||||||||||
Sbjct: 488 -------catgcacatatggcaacaagtgtag 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_n02.g1 MSMg01no107_n02.g1 CHROMAT_FILE:
MSMg01no107_n02.g1 PHD_FILE: MSMg01no107_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:13 2005
(655 letters)
>mm_chr2_7819367_7820422
Length = 1056
Score = 1166 bits (603), Expect = 0.0
Identities = 642/659 (97%), Gaps = 10/659 (1%)
Strand = Plus / Plus
Query: 1 tagagagccacatgcagaaggaagacacgctt----gtaggaggggacttgtcgataagg 56
||||||||||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct: 201 tagagagccacatgcagaaggaagaca----taaaggtaggaggggacttgtcgctaagg 256
Query: 57 aggattccaggaggtggggggaggggatgactcagagaaatgggg-agagagactgaaat 115
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 257 aggattccaggaggtggggggaggggatgactcagagaaatggggaagagagactgaaat 316
Query: 116 gaatacaatgcattacataaactgttagagaacttttctgaggaagtgctcaaactatag 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaatacaatgcattacataaactgttagagaacttttctgaggaagtgctcaaactatag 376
Query: 176 ttaaaaacctaataatttgctgctatattaacttgatttcctctctgtgtatgtacacaa 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttaaaaacctaataatttgctgctatattaacttgatttcctctctgtgtatgtacacaa 436
Query: 236 acataagtatgcacatatatgtatgtttgtgtgtgcttgtgtgtgtgtgcacatgagcac 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acataagtatgcacatatatgtatgtttgtgtgtgcttgtgtgtgtgtgcacatgagcac 496
Query: 296 atatgcatgtatatataggcacattcacatgtaggtatgtatgcacatgtgcatgaagac 355
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 497 atatgcatgtatatataggcacattcacatgtagttatgtatgcacatgtgcatgaagac 556
Query: 356 agggcataatcatgatatctttcctcaggggctttcctctttctcttgaaaagcatcccg 415
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 557 aggacataatcatgatatctttcctcaggtgctttcctctttctcttgaaaagcatcctg 616
Query: 416 ttggggcctggaacatgccaagtaggctaggctagctgaccagccagattcagggatcca 475
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 617 ttggggcctggaacatgccaagtaggctaggccagctggccagccagattcagggatcca 676
Query: 476 ttttgtctgtctttccaacactgggaatcataaacctgtttcaacaccatgaccgtgtgt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttttgtctgtctttccaacactgggaatcataaacctgtttcaacaccatgaccgtgtgt 736
Query: 536 tttttttgaaacatggcttctttagatggaaatcagtgcttttaagaaaaatgcctcact 595
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tttttt-gaaacatggcttctttagatggaaatcagtgcttttaagaaaaatgcctcact 795
Query: 596 gacatccttcttccctgcctctatgttctttaatgattagaacaataagagcttgcagc 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gacatccttcttccctgcctctatgttctttaatgattagaacaataagagcttgcagc 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1056
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1046
Effective search space: 674670
Effective search space used: 674670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
