BAC Information

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BAC

Clone NameMSMg01-108G04
Chromosome2 (Build37)
Map Location 180,542,393 - 180,680,909
singlet/doubletdoublet
Overlap geneOTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4
Downstream geneLOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108G04.T7 (MSMg01no108_g04.b1)MSMg01-108G04.TJ (MSMg01no108_g04.g1)
ACCAG321847AG321848
length699700
length of high quality
(start - end)		650 (39 - 688)572 (75 - 646)
definitionCHROMAT_FILE: MSMg01no108_g04.b1 PHD_FILE: MSMg01no108_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:14 2005CHROMAT_FILE: MSMg01no108_g04.g1 PHD_FILE: MSMg01no108_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(180,680,353 - 180,680,909)(180,542,393 - 180,542,964)
sequence
CTAAATTTGCGGCGCTAAACGACTCCTATTCGCAGAGATCCGCGGAATTC
AAACAGGTCCGGAGGCCAAAGAGAACGCAGAGGCCATGGAGGAGTGCTGC
TTACTGGCTTGCTCCCTATGGCTTCTCACCAGGTTTTTTTTATTGCTCCC
AGGACCACCAGCCCATAGTGACTGCCTACAATGAGCTAGGCCCTCAAACA
TCAATCATCAATTGAGAAAATGCACCACAGGCTTTCCCACAGATCAGTCT
GGTGGGAACATTTTCTCGGTTGAAGTTTTTTCTTCTCAATATACTCTTGC
TTGTGTCAAGTTGACAGAAAACTAGATAGCAGATGTCAAACTCAGAGACC
TGCCTCCATCTGGTGTTCAGATAAAAGGCATGCACCATCATCACCCAGTC
TGGAAGCCAGTCTTGGTCAGGGAATGCCTTAGCTTTTCCAGTACTGATCT
GATTGCTGGTGCACAGAGATATAGTGAATGTCACAGGCTCAGCCAATGTG
CTGTCCCTTTAACACTGCTTCTCTTCCAGAGGTAGCCCAAACTTTTCAGT
CCTTCCTGGACAAACTTGTCATCCCAAACACAGTGGCTCCAGAGAAGGTG
TTAGAACATGTTAGAATTATCCATACTTTCTCTTCCTTCTCCTATACCTG
CCCAGTATATGGCAGGAATGGAGCCTGGTGAAAGATAGATGGGGGTTGC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAACTGTGGTTCTTCCCAAGGCTGC
TTTCCTCTTAGCTGAAGGTCAGGTCCAGTCTCTAACAGTAGTTCCTGATT
TGAGGGTCAAGATCCTGGGAGAGACTCTTCAGCCACAGGGCAGATCAAGG
TGGCATCTCTCCAAATGTGCAGAACAGAGCATTGCTTTTGGTCTCTCTTA
TATAATGTCCAGTGGGCAACATGGGGTTCTTGGACTGTGTCTGGTTACCT
TGAATAATCAACACCACTGGGTTCAGGTTATCAGGTGCAGCCTTGGATAT
ACTGGGGTTCCTGACAAAGCTATTTTTATATGTCTAAAAGGCATTAAAAA
AAAACAAGGCAAACTTTTGCAGCTTATGGAAACACTGTCCTGGTCTTTCT
TTCTGGGTGGGTTCTGCTCCAATGAGGATATTCTTGATATTAGTGGCCCC
TACTTTCATCTGGTTCCCAGAAAAAGACTTTAAGAATGTGTTACTGGAGC
CAGGCTGTGATCAAACATGCTTTTAATCCCAGCACTTGGGAAGCAGGGGC
AGGTGGATCTCTGAGTTCAAGGCCAGTCTGGTCTACAGCATGAGGTCCAG
GACATCCAGGGCTATACCGAGATACATAGATAGATAGATAGATAGGTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_g04.b1 MSMg01no108_g04.b1 CHROMAT_FILE:
MSMg01no108_g04.b1 PHD_FILE: MSMg01no108_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:14 2005
         (650 letters)



>mm_chr2_180679860_180680909
          Length = 1050

 Score = 1054 bits (545), Expect = 0.0
 Identities = 554/557 (99%)
 Strand = Plus / Minus

                                                                        
Query: 94   ggttttttttattgctcccaggaccaccagcccatagtgactgcctacaatgagctaggc 153
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 ggttttttttactgctcccaggaccaccagcccatagtgactgcctacaatgagctaggc 991

                                                                        
Query: 154  cctcaaacatcaatcatcaattgagaaaatgcaccacaggctttcccacagatcagtctg 213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  cctcaaacatcaatcatcaattgagaaaatgcaccacaggctttcccacagatcagtctg 931

                                                                        
Query: 214  gtgggaacattttctcggttgaagttttttcttctcaatatactcttgcttgtgtcaagt 273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  gtgggaacattttctcggttgaagttttttcttctcaatatactcttgcttgtgtcaagt 871

                                                                        
Query: 274  tgacagaaaactagatagcagatgtcaaactcagagacctgcctccatctggtgttcaga 333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  tgacagaaaactagatagcagatgtcaaactcagagacctgcctccatctggtgttcaga 811

                                                                        
Query: 334  taaaaggcatgcaccatcatcacccagtctggaagccagtcttggtcagggaatgcctta 393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  taaaaggcatgcaccatcatcacccagtctggaagccagtcttggtcagggaatgcctta 751

                                                                        
Query: 394  gcttttccagtactgatctgattgctggtgcacagagatatagtgaatgtcacaggctca 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  gcttttccagtactgatctgattgctggtgcacagagatatagtgaatgtcacaggctca 691

                                                                        
Query: 454  gccaatgtgctgtccctttaacactgcttctcttccagaggtagcccaaacttttcagtc 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  gccaatgtgctgtccctttaacactgcttctcttccagaggtagcccaaacttttcagtc 631

                                                                        
Query: 514  cttcctggacaaacttgtcatcccaaacacagtggctccagagaaggtgttagaacatgt 573
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 630  cttcctggacaaacttgtcatcccaaacacagtagctccagagaaggtgttagaacatgg 571

                                                                        
Query: 574  tagaattatccatactttctcttccttctcctatacctgcccagtatatggcaggaatgg 633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570  tagaattatccatactttctcttccttctcctatacctgcccagtatatggcaggaatgg 511

                             
Query: 634  agcctggtgaaagatag 650
            |||||||||||||||||
Sbjct: 510  agcctggtgaaagatag 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no108_g04.g1 MSMg01no108_g04.g1 CHROMAT_FILE:
MSMg01no108_g04.g1 PHD_FILE: MSMg01no108_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:14 2005
         (572 letters)



>mm_chr2_180542193_180543164
          Length = 972

 Score = 1083 bits (560), Expect = 0.0
 Identities = 569/572 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaactgtggttcttcccaaggctgctttcctcttagctgaaggtcaggtccagtctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaactgtggttcttcccaaggctgctttcctcttagctgaaggtcaggtccagtctcta 260

                                                                       
Query: 61  acagtagttcctgatttgagggtcaagatcctgggagagactcttcagccacagggcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtagttcctgatttgagggtcaagatcctgggagagactcttcagccacagggcaga 320

                                                                       
Query: 121 tcaaggtggcatctctccaaatgtgcagaacagagcattgcttttggtctctcttatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaggtggcatctctccaaatgtgcagaacagagcattgcttttggtctctcttatata 380

                                                                       
Query: 181 atgtccagtgggcaacatggggttcttggactgtgtctggttaccttgaataatcaacac 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 atgtccagtgggcaacatggggttctaggactgtgtctggttaccttgaataatcaacac 440

                                                                       
Query: 241 cactgggttcaggttatcaggtgcagccttggatatactggggttcctgacaaagctatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgggttcaggttatcaggtgcagccttggatatactggggttcctgacaaagctatt 500

                                                                       
Query: 301 tttatatgtctaaaaggcattaaaaaaaaacaaggcaaacttttgcagcttatggaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttatatgtctaaaaggcattaaaaaaaaacaaggcaaacttttgcagcttatggaaaca 560

                                                                       
Query: 361 ctgtcctggtctttctttctgggtgggttctgctccaatgaggatattcttgatattagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtcctggtctttctttctgggtgggttctgctccaatgaggatattcttgatattagt 620

                                                                       
Query: 421 ggcccctactttcatctggttcccagaaaaagactttaagaatgtgttactggagccagg 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcccctactttcatctggttcccggaaaaagactttaagaatgtgttactggagccagg 680

                                                                       
Query: 481 ctgtgatcaaacatgcttttaatcccagcacttgggaagcaggggcaggtggatctctga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtgatcaaacatgcttttaatcccagcacttgggaagcaggggcaggtggatctctga 740

                                           
Query: 541 gttcaaggccagtctggtctacagcatgaggt 572
           |||||||| |||||||||||||||||||||||
Sbjct: 741 gttcaagggcagtctggtctacagcatgaggt 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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