Query= MSMg01no108_o03.b1 MSMg01no108_o03.b1 CHROMAT_FILE:
MSMg01no108_o03.b1 PHD_FILE: MSMg01no108_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:53 2005
(665 letters)
>mm_chr2_42590973_42592038
Length = 1066
Score = 1226 bits (634), Expect = 0.0
Identities = 655/662 (98%), Gaps = 1/662 (0%)
Strand = Plus / Minus
Query: 5 gaattctttcattttgcgttac-aagttcctcttaatggcttttgtgatgcattgcttca 63
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 866 gaattctttcattttgtgttacaaagttcctcttaatggcttttgtgatgcattgcttca 807
Query: 64 attctattccccaaatccataaaccataagttgtttttacagagtgcatagaaagtcggt 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 806 attctattccccaaatccataaaccataagttgtttttacagagtgcatagaaagttggt 747
Query: 124 tcactgatgctggatgttttccaagggtggcacagtatttccagtctgtaccacatgtaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcactgatgctggatgttttccaagggtggcacagtatttccagtctgtaccacatgtaa 687
Query: 184 taatgggattggtgcttaagtaggcagtgcattggatgagcaggttttgttctggcatca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taatgggattggtgcttaagtaggcagtgcattggatgagcaggttttgttctggcatca 627
Query: 244 ctaaagagtcaagtcttcagattgtatttgacatataatctcatgtctaaaaacatccac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctaaagagtcaagtcttcagattgtatttgacatataatctcatgtctaaaaacatccac 567
Query: 304 tgctcaggtgagtgtgagggaacagatccacttttatttcaaatgcgaggatgactttat 363
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 566 tgctcaggtgagtgtgagggaacagatccacttttatttcaaatgtgagaatgactttat 507
Query: 364 tgttctcttaaaagggtattagttaaaaataatcaattataatgcaacatttaattattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgttctcttaaaagggtattagttaaaaataatcaattataatgcaacatttaattattt 447
Query: 424 ataaaaggaaaattatcatggcgtattttatttcctgtattttcagtttcaaccacattt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ataaaaggaaaattatcatggcgtattttatttcctgtattttcagtttcaaccacattt 387
Query: 484 gcccggttaaaatcttagaatctgtgcctacacctcagtttgcaaggttgtttgcagcca 543
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 386 gcccggttaaaatcttagaatctgtgcctacacctcagtttgcaaggttgttagcagcca 327
Query: 544 aacttgacaacctgaatttatccctgtgacccatactgcagaaacatagaacaaaatatc 603
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aacttgacaacctgactttatccctgtgacccatactgcagaaacatagaacaaaatatc 267
Query: 604 tgcagctgtgctctgatctcaaacgtcattcacacacataaacacatatatgcacacaca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgcagctgtgctctgatctcaaacgtcattcacacacataaacacatatatgcacacaca 207
Query: 664 ta 665
||
Sbjct: 206 ta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space: 691680
Effective search space used: 691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_o03.g1 MSMg01no108_o03.g1 CHROMAT_FILE:
MSMg01no108_o03.g1 PHD_FILE: MSMg01no108_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:53 2005
(505 letters)
>mm_chr2_42453625_42454529
Length = 905
Score = 961 bits (497), Expect = 0.0
Identities = 503/505 (99%)
Strand = Plus / Plus
Query: 1 ctgttgtagaaattcagctttactttcaaatgtatgttttacttttacattcagatagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttgtagaaattcagctttactttcaaatgtatgttttacttttacattcagatagta 260
Query: 61 aaattatgtttatgaagataaactgccttttattaggaatagaaccactcttccaagtat 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aaattatgtttatgaagataaactgccttttattgggaatagaaccactcttccaagtat 320
Query: 121 aaaatagctgtccattttttttcaaaatatttgctggagatcagtatataaaacagaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatagctgtccattttttttcaaaatatttgctggagatcagtatataaaacagaagt 380
Query: 181 gcttttgactcacaggcttgaagattttttgaaatgctaagagagaagcaatgataacgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttttgactcacaggcttgaagattttttgaaatgctaagagagaagcaatgataacgc 440
Query: 241 cttctcggcaggagtgtgtttgggagtgcagtttccttggttccctgctggatttcacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctcggcaggagtgtgtttgggagtgcagtttccttggttccctgctggatttcacaa 500
Query: 301 atctttctctgcaaggaatttgtcttcaacaatgtcttgtctattacatctgcccagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctttctctgcaaggaatttgtcttcaacaatgtcttgtctattacatctgcccagaag 560
Query: 361 gcctcagaaatgcttcattgctgatggtaggtcatatattctagaaaaactgggttggtt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 gcctcagaaatgcttcattgctgatggtaggtcatatattctagaaaaactgggttagtt 620
Query: 421 taataataaagctaaaatatgcttgcctaaaagcttctttacagaacatattacccgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taataataaagctaaaatatgcttgcctaaaagcttctttacagaacatattacccgaat 680
Query: 481 atttaaataacatcattatccagtg 505
|||||||||||||||||||||||||
Sbjct: 681 atttaaataacatcattatccagtg 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
