Query= MSMg01no108_p21.b1 MSMg01no108_p21.b1 CHROMAT_FILE:
MSMg01no108_p21.b1 PHD_FILE: MSMg01no108_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:01 2005
(604 letters)
>mm_chr2_48203390_48204393
Length = 1004
Score = 1102 bits (570), Expect = 0.0
Identities = 594/602 (98%), Gaps = 1/602 (0%)
Strand = Plus / Plus
Query: 1 caaacataaccaaaaactttcagattactgctgaccgcctctaacgctgatcagtgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacataaccaaaaactttcagattactgctgaccgcctctaacgctgatcagtgtttt 260
Query: 61 aagaaacattagaaacatttcctgttatgtgaatcgctcagtgccttttctttttatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaacattagaaacatttcctgttatgtgaatcgctcagtgccttttctttttatcct 320
Query: 121 ctgggttttctcaagagctataatgtaaatatttggatgacaattactaagcatttctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggttttctcaagagctataatgtaaatatttggatgacaattactaagcatttctgt 380
Query: 181 atattatgggaggagaagactgtaacttaaatagcctggtgaatgccttgtaaggcatcg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattatgggaggagaagactgtaacttaaatagcctggtgaatgccttgtaaggcatct 440
Query: 241 agattttgtcctaaagacttcagctaaagtatacatcttatttttgtgcccatcgtatcc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agattgtgtcctaaagacttcagctaaagtatacatcttatttttgtgcccatcgtatcc 500
Query: 301 agtagcatggatataaattgaattaaaaatagtaaatttcctaagatttgaaatattaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtagcatggatataaattgaattaaaaatagtaaatttcctaagatttgaaatattaga 560
Query: 361 aatcttaacctagaaagtgacttagtaaacagaatagcacaaaaaccaaaacaataaaaa 420
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 aatcttaacctagaaagtgacttagtaaacagaatagcacaaaaataaaaacaataaaaa 620
Query: 421 aaacaaaaaaacaaatctaatgtcactcatgttactaatcatagcccatatacttggtac 480
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 ac-caaaaaaacaaatctaatgtcactcatgttactaatcatagcctatatacttggtac 679
Query: 481 atttattaaattgttattgaaaccttaagcccagcaggaattttgagagtaaggattcta 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttactaaattgttattgaaaccttaagcccagcaggaattttgagagtaaggattcta 739
Query: 541 ataggccattcttatttccacagtaaaatagcaccatagaaacttttataataaaagaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ataggccattcttatttccacagtaaaatagcaccatagaaacttttataataaaagaga 799
Query: 601 tt 602
||
Sbjct: 800 tt 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_p21.g1 MSMg01no108_p21.g1 CHROMAT_FILE:
MSMg01no108_p21.g1 PHD_FILE: MSMg01no108_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:02 2005
(555 letters)
>mm_chr2_48276413_48277367
Length = 955
Score = 725 bits (375), Expect = 0.0
Identities = 375/375 (100%)
Strand = Plus / Minus
Query: 181 aaagattactgagtttgaggtcaccctggtagatatagtgagtaccaggtcaaatagagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 aaagattactgagtttgaggtcaccctggtagatatagtgagtaccaggtcaaatagagc 896
Query: 241 taaatcccatggttgtgttgttgtgtttcaaaaaaaatcaatctctctctctgtgtctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 taaatcccatggttgtgttgttgtgtttcaaaaaaaatcaatctctctctctgtgtctct 836
Query: 301 ctgtctgtgtctttctctctgtgtctctctcttctgtctcttatctctgtctctcactgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ctgtctgtgtctttctctctgtgtctctctcttctgtctcttatctctgtctctcactgt 776
Query: 361 ctctgtgtctgtctctgtctttctcttatataattcatcatccaattgaagattaattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ctctgtgtctgtctctgtctttctcttatataattcatcatccaattgaagattaattat 716
Query: 421 ttaaggttggggaaaacagcaaagctaaaccaccttctaaagatttactaatctgtgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttaaggttggggaaaacagcaaagctaaaccaccttctaaagatttactaatctgtgaat 656
Query: 481 gccatgtgcagtgctctatttggagggtgcacagttgtataaatactattgctgtatatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gccatgtgcagtgctctatttggagggtgcacagttgtataaatactattgctgtatatg 596
Query: 541 cctgtttactaaaga 555
|||||||||||||||
Sbjct: 595 cctgtttactaaaga 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
