Query= MSMg01no109_a04.b1 MSMg01no109_a04.b1 CHROMAT_FILE:
MSMg01no109_a04.b1 PHD_FILE: MSMg01no109_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:03 2005
(249 letters)
>mm_chr2_59949804_59950450
Length = 647
Score = 447 bits (231), Expect = e-130
Identities = 244/249 (97%), Gaps = 2/249 (0%)
Strand = Plus / Minus
Query: 1 tttacaatgtccttataacattttataaaatttaaaatccttataaaattcagaaatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttacaatgtccttataacattttataaaatttaaaatccttataaaattcagaaatgca 388
Query: 61 tttttaaattttggtttttatagccatgttttctctgtgtgtccttgttgtcttctcccc 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttttaaattttggtttttagagccatgttttctctgtgtgtccttgttgtcttctcccc 328
Query: 121 ctccccctgtgtcatcttttttcttttcctttttctttttttaaacgaaaattgacttta 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctcaccctgtgtcatcttttttcttttcctttttctttttttaaacgaaaattgacttta 268
Query: 181 aaatagttaatttaacttaaaaaactacctcacatatgtggttctgtgtaaggcattgac 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaatagttaatttaactt--aaaactacctcacatatgtggttctgtgtaaggcattgac 210
Query: 241 catgtaagt 249
|| ||||||
Sbjct: 209 cacgtaagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 647
Length adjustment: 9
Effective length of query: 240
Effective length of database: 638
Effective search space: 153120
Effective search space used: 153120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no109_a04.g1 MSMg01no109_a04.g1 CHROMAT_FILE:
MSMg01no109_a04.g1 PHD_FILE: MSMg01no109_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:03 2005
(177 letters)
>mm_chr2_59804722_59805298
Length = 577
Score = 325 bits (168), Expect = 1e-93
Identities = 174/176 (98%)
Strand = Plus / Plus
Query: 1 atttatctgaaagtggaataattcactaaggaaagtctaaaaccagacagtgtcactctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttatctgaaagtggaataattcactaaggaaagtctaaaaccagacagtgtcactctt 260
Query: 61 agcttacttagcttgctgccaggaaggaaaccacctggtgttgattaatccttgctgggt 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcttacttagcttgctgctaggaaggaaaccacctggtgttgattaatccttgctgggt 320
Query: 121 ttgaggagtataagttatatccggatcactgctcattgttagactggtgcctactg 176
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaggagtataagttatatccagatcactgctcattgttagactggtgcctactg 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space: 96161
Effective search space used: 96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
