BAC Information

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BAC

Clone NameMSMg01-109D16
Chromosome2 (Build37)
Map Location 83,864,184 - 83,864,477
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
Downstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109D16.T7 (MSMg01no109_d16.b1)MSMg01-109D16.TJ (MSMg01no109_d16.g1)
ACCAG322467AG322468
length756730
length of high quality
(start - end)
99 (87 - 185)294 (85 - 378)
definitionCHROMAT_FILE: MSMg01no109_d16.b1 PHD_FILE: MSMg01no109_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:22 2005CHROMAT_FILE: MSMg01no109_d16.g1 PHD_FILE: MSMg01no109_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACTNAATTTCTATAATTGCGGCGCTATACGATCACTATATTCAGAAGA
TCCGCGGAATTCTTGTCTGTTTTCCATAAGAGAAGAGAGATCCACAGGAA
GTGGCTTTGTGTCAGCCCTTCTACATAAGGACCACATGATACACACACTG
GCTTCTCTAGAGGCCATGCTTACATACAGAAATAATACATAAACACTGGT
ATGCCTTCCTCATACCTTTAACTGTACTCAGCTAGACTCCCTGTATCCTA
TCAGGAGGATCCGAGCTTATGAACCATGAATACCACTACAGTCAGAGCGC
CGATGATAAAATAATCCCCCTCTCCTACCCCCACATTTTATTTTGTTCCT
AAAGTTGCCCACCTAGAGTCCTTATTTTTTTCACGCCCCCCCCTCGCAGA
TATAATCAATAACCCCCACCGAACCCTTCCCTGTATTATAAAAAAACCGC
CCTCCTGCTCCTTGCTCCCTGTGCTTCTTCCCCTTATTCCCCTCTTATCC
CCTTATACACTCCTTCCCCATATTCTTTGTTATTAACAAACAAACTACAC
GCCTTCCCGATTAAACACTTACCCAACCCCCAATTTTTCCCCTTTCTCCC
CCTCCCCCCTTTACCCTTTCATCCCCTTTACCCCCCTTCATTTACCCTCC
CCTACCCGCCCTTTTCCTTTTCCCACATTTCTTTTTTCCCTCTTCCTCTA
CCCCTTTTCCCTCCCCCCCCCCTTCCCCTTATTCCCCCCCCCCCTATCCC
TTCCCG
ATTTTTTTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAGGGTGACACAT
TGTTATGTAAACATTGCTTACTAAAGACTTAATGGATGTGAAAAAGAATG
AATGTGCTTAGTACATTGAATTACACACATTCCTATAGATATTCTTAAAA
TCTAAGAAAATCTATTTGTTTGAATCTTCCACTTCATATCCTTTCCTTTG
GTTTAATTTGAATAGATTTATCAGAAGTGGAGCCTCTAGTTTCAAATCAA
GAGACATCATTAATGGAATGAAATTTTGCACTTCAATCTAAAAACACAGT
AATAGTCATTAATTTTTCAACTTGTCAGTACCAACTGTGTTAATGTAATA
GTGCCTAAGATATCTAATGTTTGTCTCAACGCTATCACAACAGTTTTCTA
TGAAAACCTTTATCTTTAGTAACTTCATGAATGGACTCACAGTATCTGTT
GTTTCAGGATTCTTGTTGCCATTGTTTGGCTCCTTCTGGTGTAAGTCTTT
ACAAATGCAGTGCCTCATGACTGTGTGTAAAAGTTTTTAATCTCATGTGA
AATCTCTTCCTTGAGGGATATTGTGCAGGAGGACGAGTAGGATGATGTAT
AAAAATACCTTTTTTTTCCCCCCCCTTTTTACCTTTTCCTCCTACTCCTT
TTTTTTTCTCCCCCCTTTTTTATTTCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_d16.g1 MSMg01no109_d16.g1 CHROMAT_FILE:
MSMg01no109_d16.g1 PHD_FILE: MSMg01no109_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:22 2005
         (294 letters)



>mm_chr2_83863984_83864677
          Length = 694

 Score =  545 bits (282), Expect = e-160
 Identities = 291/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaagggtgacacattgttatgtaaacattgcttactaaagacttaatggatgtgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaaaagggtgacacattgttatgtaaacattgcttactaaagacttaatggatgtgaaaa 435

                                                                       
Query: 61  agaatgaatgtgcttagtacattgaattacacacattcctatagatattcttaaaatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agaatgaatgtgcttagtacattgaattacacacattcctatagatattcttaaaatcta 375

                                                                       
Query: 121 agaaaatctatttgtttgaatcttccacttcatatcctttcctttggtttaatttgaata 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agaaaatctatttggttgaatcttccacttcatatcctttcctttggtttaatttgaata 315

                                                                       
Query: 181 gatttatcagaagtggagcctctagtttcaaatcaagagacatcattaatggaatgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gatttatcagaagtggagcctctagtttcaaatcaagagacatcattaatggaatgaaat 255

                                                                 
Query: 241 tttgcacttcaatctaaaaacacagtaatagtcattaatttttcaacttgtcag 294
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttgcacaccaatctaaaaacacagtaatagtcattaatttttcaacttgtcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)