Query= MSMg01no109_l19.b1 MSMg01no109_l19.b1 CHROMAT_FILE:
MSMg01no109_l19.b1 PHD_FILE: MSMg01no109_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:04 2005
(479 letters)
>mm_chr2_124728959_124729842
Length = 884
Score = 855 bits (442), Expect = 0.0
Identities = 472/484 (97%), Gaps = 5/484 (1%)
Strand = Plus / Minus
Query: 1 actaactcaccccagaagactgctgtgaggccatggctccactgagcaccctgggctgct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 684 actaactcaccccagaagactgctgtgaggccatggctccactgagcacccttggctgct 625
Query: 61 aacgtagagagcagggctaggctgcaccctcttctcgagacattgtaatcctacttagag 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacgtagagagcagggctgggctgcaccctcttctcgagacattgtaatcctacttagag 565
Query: 121 acaacatagagatcccaagacttaaaagatgtccaacaatgactcatccttcttaccacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acaacatagagatcccaagacttaaaagatgtccaacaatgactcatccttcttaccacg 505
Query: 181 aatgtaaggaagccctgtagtcatgggctcagtcttggcgggaatgttacagtaacttac 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 aatgtaaggaagccctgtagtcatgggctcagtcttggctggaatgttacagtaacttac 445
Query: 241 acattatcaaattatttttttaaaagcgattgtgaaattccatctcaacttggcaacagt 300
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 acattatcaaattaattttttaaaagcggttgtgaaattccatctcaacttggcaacagt 385
Query: 301 ggttaagcaattttggctttggct----ggggagttattgaagctagagagggtgtttgt 356
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 384 ggttaagcaattttggctttggctggggggggggttattgaagctagagagggtgtttgt 325
Query: 357 tttgtggctggatctgctgaggggcacacagcctagatggttaatctgggttttattttt 416
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 tttgtggctggatctgctgaggggcacacagccaagatggttaatctgggttttattttt 265
Query: 417 ttgctgacataagggttttacctgagccactgtgttttttttc-cccctggtcctttctg 475
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 ttgctgacataagggttttacctgagccactgtgttttttttctcccctggtcctttctg 205
Query: 476 aggc 479
||||
Sbjct: 204 aggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 884
Length adjustment: 10
Effective length of query: 469
Effective length of database: 874
Effective search space: 409906
Effective search space used: 409906
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_l19.g1 MSMg01no109_l19.g1 CHROMAT_FILE:
MSMg01no109_l19.g1 PHD_FILE: MSMg01no109_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:04 2005
(249 letters)
>mm_chr2_124570187_124570835
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Plus
Query: 1 attctttgtcaggaacaaattggagaaaattgctacagtcgtatcagcatttcctagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttgtcaggaacaaattggagaaaattgctacagtcgtatcagcatttcctagaac 260
Query: 61 catttagtgccatgcttgggaaacgtactcaaacacaagccagcagtccagaaaatcgag 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 catttagtgccatgcttgggaaacgtactcaaacgcaagccagcagtccagaaaatcgag 320
Query: 121 tccttagacagcgggggctcttctgatccgaagggcaccattgcgtgacaatgaatgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttagacagcgggggctcttctgatccgaagggcaccattgcgtgacaatgaatgctt 380
Query: 181 cagtcttgacagtaatgtgacacagagacattcaagtagtcagaccttgctctgtcccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcttgacagtaatgtgacacagagacattcaagtagtcagaccttgctctgtcccct 440
Query: 241 tgtatgtga 249
|||||||||
Sbjct: 441 tgtatgtga 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
