BAC Information

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BAC

Clone NameMSMg01-110G04
Chromosome2 (Build37)
Map Location 37,830,062 - 37,830,563
singlet/doubletsinglet
Overlap geneDennd1a
Upstream geneOlfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
Downstream geneLOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110G04.T7 (MSMg01no110_g04.b1)MSMg01-110G04.TJ (MSMg01no110_g04.g1)
ACCAG323325AG323326
length7241,227
length of high quality
(start - end)
505 (63 - 567)---
definitionCHROMAT_FILE: MSMg01no110_g04.b1 PHD_FILE: MSMg01no110_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:57 2005CHROMAT_FILE: MSMg01no110_g04.g1 PHD_FILE: MSMg01no110_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGTCCTGTGGCTGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCACTCTGTACACCAGGTTGGCCTCGAACT
CAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCA
CCACCACGCCCGGCTTCAGGTTCTTGTTTAAAATAGGAATCAGATTAACA
GGGGACAGGTATGAGTCATTTCATAATCTGTCCCCTAAGTGCAAAATGCT
TTTAATCCTGGCTTCTTTGCAGATACCTCTTAGAAACAAATAATAGGTGA
GTTAGATCTACTAATGTGCACAATGCTTCAGCTTCCTGGTCACTGCTTTA
AAAGGGCTTCTGGCTGTGTTAAGATGGCCCTTTAAAGCTTACCCTTGTAT
AAGTACATTCCTCACGTCACAGAAATTTTTAATGAGAAGCAAGTGAAGAA
ATGTGTGTACACCATATCCATCACATGATAGGTGCAAAACAAATGGAAGT
GACTACCAGTATTTTGTAGCTGTGGAATGGAATACTTTTTTTAAAGAAAG
AGTCACTTTTAACTGAGGTCAGCCTCATGGGTCTGAGGACTTCTTTTCAT
AAAATCCTTGGCGGTGATTGGCGTATACCCTGATGGCAGCGTTTCCATGG
CATTGACGATTGTTGAAAGATCCCATGGCCTTATGTTAATCCCACTTGGT
ATCTGGGTTCATGTGATTTCTATC
CCCCCGNNNNNTTTATATGAGTATGTGATGGGCTTTATAAAATATATTAT
TGTCGATAATATATAAAAGCTTATCTATTGCTNGTGTTTCTCGCTGCTTT
ATTCTGTCTTCTGTGTCTATTTATTGAGTAATCCCCCGCGGTATAATATT
CATCTAACGCCTCATAGTGTAAGAGATATTATCACGACTAGATGTTATTA
TGCATCGTTCCCCTCTTNCANCTACCCTATCTATACTTAGAAAGATATTC
TGCATCATTGCGCGAGGAATGAGTGAAGTATATACTACTGAACGATAAAC
AATACACTACCAGACTGTTTACTGCCCTCAGCACAGCAATGTTATAATAG
AGCACGCGGAACTGGNGAGANTGTTACTATACACATATAATATGAGCCTT
ATACATCGCAATATAAGAATACAATTATTGAACTACATATACTATATGAT
ACAAGCGACACACAATACGTTGAGTAATACGACATTAATGAGCATAAAGT
ATAAAGTAGATTCACTATTTTATATATTAATATTATACAGCGCATATATA
TATATGTCGTATCGGCTCAGCTATTCGTTGTATTCTCTCACGACATCCAC
AAGGTATGTGAGATATGCATCTATATACAGAAAAAGACATCCAATAACAA
ACACATATGATGAGAAAGTAGAGGAGAGTCGGTTAGAGAGAGGAGTAGGA
TGTTGTATTGGCTCTCAGTATAAGACAAAAAGCGTGGTATGTGCATGTAG
TATAGCGTCAATGCTGTGTATTTGTATGTAACGGCGACGGAGACTAGATA
TTCGAGTAATCTTCGCAATATACCAGACCGTACGCCAGCACCATTTATTC
TCAACCCGCGCCTCGTTAGTATTAGAGATAGATAAACATTATTAATANGN
CCCGGAAACGACGCAGACGATGAGACCNACACTGTAGATATCAGTCAGGC
GTAAATTATATAAACGCTGGGAGGGTAATTGCGATATACCGTTTGACGCA
TGAGACATTGACACGGACTAAGATTATCCGCGGGAGATATATCGCTGCGC
TTGATCACAGCATATATTATAATATATACACTATCACTAATGTGACGCAT
TGTTAGATGTGAGAGACGAAGTACACGACATTAATCGATTGTTCACCACC
GCTGTTATGCCTATGGTCACGTATCCCAATGATTTTAAATGTAGAATACA
TGCACAATACTGATATTATTCGGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_g04.b1 MSMg01no110_g04.b1 CHROMAT_FILE:
MSMg01no110_g04.b1 PHD_FILE: MSMg01no110_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:57 2005
         (505 letters)



>mm_chr2_37829759_37830663
          Length = 905

 Score =  955 bits (494), Expect = 0.0
 Identities = 500/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtacaccaggttggcctcgaactcagaaatccgcctgcctctgcctcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggaattcactctgtagaccaggttggcctcgaactcagaaatccgcctgcctctgcctcc 746

                                                                       
Query: 64  cgagtgctgggattaaaggcatgcaccaccacgcccggcttcaggttcttgtttaaaata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 745 cgagtgctgggattaaaggcatgcaccaccacgcccggcttcaggttcttgattaaaata 686

                                                                       
Query: 124 ggaatcagattaacaggggacaggtatgagtcatttcataatctgtcccctaagtgcaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaatcagattaacaggggacaggtatgagtcatttcataatctgtcccctaagtgcaaa 626

                                                                       
Query: 184 atgcttttaatcctggcttctttgcagatacctcttagaaacaaataataggtgagttag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgcttttaatcctggcttctttgcagatacctcttagaaacaaataataggtgagttag 566

                                                                       
Query: 244 atctactaatgtgcacaatgcttcagcttcctggtcactgctttaaaagggcttctggct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atctactaatgtgcacaatgcttcagcttcctggtcactgctttaaaagggcttctggct 506

                                                                       
Query: 304 gtgttaagatggccctttaaagcttacccttgtataagtacattcctcacgtcacagaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgttaagatggccctttaaagcttacccttgtataagtacattcctcacgtcacagaaa 446

                                                                       
Query: 364 tttttaatgagaagcaagtgaagaaatgtgtgtacaccatatccatcacatgataggtgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttttaatgagaagcaagtgaagaaatgtgtgtacaccatatccatcacatgataggtgc 386

                                                                       
Query: 424 aaaacaaatggaagtgactaccagtattttgtagctgtggaatggaatactttttttaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaacaaatggaagtgactaccagtattttgtagctgtggaatggaatactttttttaaa 326

                                 
Query: 484 gaaagagtcacttttaactgag 505
           ||||||||||||||||||||||
Sbjct: 325 gaaagagtcacttttaactgag 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)