Query= MSMg01no110_p10.b1 MSMg01no110_p10.b1 CHROMAT_FILE:
MSMg01no110_p10.b1 PHD_FILE: MSMg01no110_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:43 2005
(566 letters)
>mm_chr2_42176633_42177599
Length = 967
Score = 1075 bits (556), Expect = 0.0
Identities = 562/564 (99%), Gaps = 1/564 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatagtggttcagaacaaaagcctgtgttgtgtttactagtagactcatattc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ggaattccatagtggttcagaacaaaagcctgtgttgtgtttactagtagactcatattc 708
Query: 64 tgtcttaattctctcacaaattctgtgactaggatatggtgtagaagttggggtaagcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgtcttaattctctcacaaattctgtgactaggatatggtgtagaagttggggtaagcaa 648
Query: 124 taggatttcgtacgcagaaagttcatggtgtcctgacacaatgtatatgacacacacaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 taggatttcgtacgcagaaagttcatggtgtcctgacacaatgtatatgacacacacaaa 588
Query: 184 ggttcagg-aaaaaaaaataaaagcaggaatgagacaggtcagtaagataatcagacaag 242
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 587 ggttcaggaaaaaaaaaataaaagcaggaatgagacaggtcaggaagataatcagacaag 528
Query: 243 agaggttttgtgtttaggaacaggcattaaacccttgtaattggaagactgtcctaaaga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agaggttttgtgtttaggaacaggcattaaacccttgtaattggaagactgtcctaaaga 468
Query: 303 actgaagaaataattggtattctatctactcatataatacaggaacatgagatttacact 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 actgaagaaataattggtattctatctactcatataatacaggaacatgagatttacact 408
Query: 363 gacctcacatattttagtaactatatcaataagtggtctcagtaaaatactgacaagttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gacctcacatattttagtaactatatcaataagtggtctcagtaaaatactgacaagttt 348
Query: 423 ggggaagaaaaataaaagaaactcatgaaaaatcatacacttgctatttagattttttaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggggaagaaaaataaaagaaactcatgaaaaatcatacacttgctatttagattttttaa 288
Query: 483 cctagatcttttcaagtagcacagagcttcgcagtgtgtgttgtgaaaatcctgtgactt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cctagatcttttcaagtagcacagagcttcgcagtgtgtgttgtgaaaatcctgtgactt 228
Query: 543 atccctgctgtccataaaatattg 566
||||||||||||||||||||||||
Sbjct: 227 atccctgctgtccataaaatattg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_p10.g1 MSMg01no110_p10.g1 CHROMAT_FILE:
MSMg01no110_p10.g1 PHD_FILE: MSMg01no110_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:43 2005
(568 letters)
>mm_chr2_42054172_42055138
Length = 967
Score = 1056 bits (546), Expect = 0.0
Identities = 562/568 (98%), Gaps = 2/568 (0%)
Strand = Plus / Plus
Query: 1 aacattgagtgggtttataatctgtgtgagagaatttctagattaattaattttgctata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacattgagtgggtttataatctgtgtgagagaatttctagattaattaattttgctata 260
Query: 61 gaacgaaatcttacttttgcaattttcacaaaagtataaatatgaaattattcctttctt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacgaaaccttacttttgcaattttcacaaaagtataaatatgaaattattcctttctt 320
Query: 121 tttctcttccttgacacttcaaatcattgatcactgaaaagcaaattttataggagtctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctcttccttgacacttcaaatcattgatcactgaaaagcaaattttataggagtctt 380
Query: 181 tatgtctttctaagcctaagagggagtttcaacagaatgataacaaatttattttccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtctttctaagcctaagagggagtttcaacagaatgataacaaatttattttccatg 440
Query: 241 gttttaattcttctcttaagatatacttttgttttgtttttttttagtttttttaaatag 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 tttttaattcttctcttaagatatacttttgttt--tttttttttagtttttttaaatag 498
Query: 301 atattttctttacttacatttcaaatatcaccccctttcctcgtttcccctccaaaaatc 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atattttctttacatacatttcaaatatcaccccctttcctcgtttcccctccaaaaatc 558
Query: 361 ccctcaaccttccccctccccctgctccccaacctacccactcctattacagttctggca 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cccttaaccttccccctccccctgctccccaacctacccactcctattacagttctggca 618
Query: 421 ttcccctatactggggcatagaaccttgtttctactcttaaatcttaatcctgaagatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttcccctatactggggcatagaaccttgtttctactcttaaatcttaatcctgaagatat 678
Query: 481 caacttccatatttaaaatttctccaggcctgcaagttggaatatggttgaaatgatcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 caacttccatatttaaaatttctccaggcctgcaagttggaatatggttgaaatgatcaa 738
Query: 541 ttttgtgaattaaatttcagctctaaga 568
||||||||||||||||||||||||||||
Sbjct: 739 ttttgtgaattaaatttcagctctaaga 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space: 534006
Effective search space used: 534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
