BAC Information

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BAC

Clone NameMSMg01-111P14
Chromosome2 (Build37)
Map Location 135,867,735 - 135,868,077
singlet/doubletsinglet
Overlap genenone
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788, Plcb4
Downstream gene6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111P14.T7 (MSMg01no111_p14.b1)MSMg01-111P14.TJ (MSMg01no111_p14.g1)
ACCAG324509AG324510
length1,3411,146
length of high quality
(start - end)
345 (70 - 414)600 (76 - 675)
definitionCHROMAT_FILE: MSMg01no111_p14.b1 PHD_FILE: MSMg01no111_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:58 2005CHROMAT_FILE: MSMg01no111_p14.g1 PHD_FILE: MSMg01no111_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTATGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCCTC
TGCTCCAGGTGATGATTCCAGAATCCATGCTGTTGCTTACAGTTCTGCTA
TCTTATGGCTTCAGTGTTGTACTGTTGTCACACATGGTCAACAGTTTTCA
AGTTTCTGATTATTCAGCTCCATTTCTTGGCCTGGGCTGGGACAAAAATG
CTAAGACTCAAAGATGGTATAACGTGGCCTCTGCTGCCTCTACCTTCACC
CTGAATCCTTTTCAATCTGCTCACATCTAGACATTCTCCTGCCTCAGGCA
TGGCATCATGATGGAGAATGTGTGGCAAAGCAAGCTGCTCTTGTCATTAG
AGCCAGAAAGGAGAAGAAGGCGAGGGGTGGGGGAGTGAAGAAAAGAGGAG
GATGGGAGGTGTTCTTTTTTTTTCCTCTCTTTTCTTTTTTTTTTTTTCCC
CCCCCCTTTTCTTCTTTTTCCCTTTCCTCCTTTTTCTTTTCTTCTCTTTC
TCTTTTTTCTTCTTTCTTCCTCTTTCTCCTTCCTTTCTTTTTTTCTTCTT
TCCCTTTCTTTTTCTTTCCTTCTTTTCCTTCTCTTTTTTTTTTCCTTTCT
TTTTCTCCTTTTTCTCCTCTTCTCTCTCTTCTTTTTTCTTTCTCCTCTTT
TTTTTTTTTTCTTTTTTTTCCTTTTTCTTCCTCTTTTTTTTTTCTTTTTT
TTTTTCTCTTTCTTCTTTTTTTTTTTCTCTCTTTCCCTCTTCACTCTCTN
TCTTTTTCTATTTCTTTCTTCCTCTTTCTCCTTTTCTCTTTTTTTCCTCT
TCCTTTCTTCCCCTTCTCTTCCTCCTTTCATTCTCCTTTAATTATCTTTT
CCTCTTTTTCTCTTCTTCTCTCTTATTTCTTCTCTTCCTCTTTACTCTAT
CTTTCTTTTATTTCTTCTTTTCTTCCTTCTCATTCTTCTTATATTTCTTC
TCTCTTTTTTCCTTATCTTCTCCTTTATCTCTCTCTCCTCACCTCTACTT
TCTCTACCCTCCCTATTTCTCTTATTCTCTTTCTTATCNACTCTCTTATT
TCCNTACTNCTTTTTTCTCCTTTTTTTCTCCTTTCTCTATCTTCCTCTCA
CCTTCCTCCTTCTTTTATTTATCTCTCTTCTTTACTCCTCTCTACTTTCT
TCCTCCTTTTCTTCTTTCTTGTCTTTCCTTCTTTTATTCTCTCTCTTCAC
TTACTTCTTCGTCTCCTCTCCTTTTATTCCATTATTCTCCTATTCTTATT
TGATCTCCTGCTTTTCTATCTCTCCTCTCACTTCTCTTCTATTCCTTTCT
TCCGCTTTTTCTTATTCTAATCCTTTTTCTATCCTTCATCC
NNNCGCCAATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCATTAAACTCTGAGGAAACAGACTGGGAGGAAG
AAGCAGCCCTTTACCAGCCAGCTAATTGGTCAAGAAAAAAGCCAAAAGCG
GCTGGCGAAAGCCAGCGTACTGTTCAACCTCCGGGCAGTCGGTTTCAAGG
TCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTCAGCAATGCGCAG
AGAGATGCGCAGAGAGGCAATGCGCAGAGAGATGCGCAGAGAGGCAGTGC
GCAGAGAGATGCGCAGAGAGGCAGTGCGCAGAGAGGCAGTGCGCAGAGAG
GCAGTGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAAC
AGGCATTTCCAGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCG
GTAGAATACGTACAAATTAAAGAACTTGCCGAGTCGGTCCGTAAATACGG
AACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGG
CACTAACTCCTGCTGACTGGCAAACGATTGTAAAAGCCGCTCTCCCTAGT
ATGGGCAAATATATGGAATGGAGAGCGCTTTGGCACGAAGCTGCACAAGC
GCAGGCCCGAGCAAACGCAGCCGCTTCGACNCCAGAGCAGAGAGATTGGA
CTTTTGACTTGTTGACGGGTCAGGGAGCTTATTCTGCTGATCAGACAAAC
TACCATTGGGGAGCTTATGCCCAGATTTCTTCCACGGCTATTAGGGCCTG
GAAGGCGCTCTCCCGAGCAGGTGAAACCACTTGGGCAGTTAACAAAGATA
ATCCAGGGACCTCAGGAATCCTTCTCAAATTTTGTGGCCAGAATGACAGA
AGCAGCAGAGCGTATTTTTGGAAAGTCAGAGCAAGCTGCCCCTTCTGATA
GAACAGCTCATCTATGAACAAGCCCCAAAGGGAGTGCCCCAGCGGCCCAT
AACCCCCAAAAAAAGAACAAAGGGCTTAAAAAAAATTGGCTTCAAGGGTC
TGTCCGAAAAACCTTTGGGGGAAACCTCTCTAACCAATGGCAGGTTTTAA
TCGGGTTGGCCAATCCCTTCTCAATCCCCAAAAATCCGCCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_p14.b1 MSMg01no111_p14.b1 CHROMAT_FILE:
MSMg01no111_p14.b1 PHD_FILE: MSMg01no111_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:58 2005
         (345 letters)



>mm_chr2_135867535_135868279
          Length = 745

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatccatgctgttgcttacagttctgctatcttatggcttcagtgttgtactgttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agaatccatgctgttgcttacagttctgctatcttatggcttcagtgttgtactgttgtc 484

                                                                       
Query: 61  acacatggtcaacagttttcaagtttctgattattcagctccatttcttggcctgggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acacatggtcaacagttttcaagtttctgattattcagctccatttcttggcctgggctg 424

                                                                       
Query: 121 ggacaaaaatgctaagactcaaagatggtataacgtggcctctgctgcctctaccttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggacaaaaatgctaagactcaaagatggtataacgtggcctctgctgcctctaccttcac 364

                                                                       
Query: 181 cctgaatccttttcaatctgctcacatctagacattctcctgcctcaggcatggcatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cctgaatccttttcaatctgctcacatctagacattctcctgcctcaggcatggcatcat 304

                                                                       
Query: 241 gatggagaatgtgtggcaaagcaagctgctcttgtcattagagccagaaaggagaagaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gatggagaatgtgtggcaaagcaagctgctcttgtcattagagccagaaaggagaagaag 244

                                                      
Query: 301 gcgaggggtgggggagtgaagaaaagaggaggatgggaggtgt 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcgaggggtgggggagtgaagaaaagaggaggatgggaggtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)